| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 469901 = | 176 (0.700) | 11 (0.060) | 7/104 | 12.2 | 9.0% | intergenic (+15/‑221) | adk/hemH | adenylate kinase/ferrochelatase |
| ? | NC_012967 | = 4210195 | 93 (0.500) | intergenic (+38/+95) | rluF/yjbD | 23S rRNA pseudouridine(2604) synthase RluF/DUF3811 domain‑containing protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 178 total aligned reads displayed.
GACGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCACAAGCAAACTTATCA > NC_012967/469830‑469972 | gACGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCAc < 2:7739113/72‑1 (MQ=255) aCGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACg > 2:2555432/1‑72 (MQ=255) aCGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACg > 1:742932/1‑72 (MQ=255) aCGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGAGCGCACg > 2:3085221/1‑72 (MQ=255) aCGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCNACNTCGAAAGCGCGCACg > 2:6541717/1‑72 (MQ=255) cGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACgg > 1:6172704/1‑72 (MQ=255) cGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACgg < 2:7195092/72‑1 (MQ=255) ggCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCCGCCACTTCGAAAGCGcggacgga > 2:8079368/1‑72 (MQ=255) gCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGAc > 2:4163391/1‑72 (MQ=255) gCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGAc < 1:3893740/72‑1 (MQ=255) gCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGAc < 2:5917552/72‑1 (MQ=255) aCCAAGCCTGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAg > 1:8464640/1‑72 (MQ=255) aCCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAg > 2:2348734/1‑72 (MQ=255) ccAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGt > 2:8588793/1‑72 (MQ=255) ccAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGt < 1:4950355/72‑1 (MQ=255) cAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTc > 1:6934071/1‑72 (MQ=255) aaGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTcc > 2:1739055/1‑72 (MQ=255) aaGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTcc > 1:4492512/1‑72 (MQ=255) aGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTccc > 2:7798442/1‑72 (MQ=255) gCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTcccc < 1:6266368/72‑1 (MQ=255) gCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTcccc < 2:4636237/72‑1 (MQ=255) ccGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCt < 1:5750467/72‑1 (MQ=255) ccGGTTGCCGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCt > 2:5406191/1‑72 (MQ=255) cGGTTGCTGAAGTTCGCGNTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTc < 1:3569185/72‑1 (MQ=255) cGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTc < 1:6751504/72‑1 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg < 2:5339551/72‑1 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg < 2:2439068/72‑1 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg < 2:1514919/72‑1 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg > 1:6286109/1‑72 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg < 1:1102654/72‑1 (MQ=255) ggTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCg > 1:6914225/1‑72 (MQ=255) tGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccc > 1:463815/1‑72 (MQ=255) tGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccc < 1:6517809/72‑1 (MQ=255) gCTGGAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGcccc < 2:4207379/72‑1 (MQ=255) gCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGcccc < 2:3406518/72‑1 (MQ=255) cggAAGTTCGCGCTTATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccccc < 2:352212/70‑1 (MQ=255) cTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccccc < 1:5979044/72‑1 (MQ=255) cTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccccc < 2:3273980/72‑1 (MQ=255) cTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccccc < 1:9052100/72‑1 (MQ=255) cTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGccccc < 1:1985861/72‑1 (MQ=255) tGAAGTTCGCGCTGATCTNGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCt < 1:3531391/72‑1 (MQ=255) tGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCt > 1:4207119/1‑72 (MQ=255) tGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCt < 2:7458640/72‑1 (MQ=255) gAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTc < 2:277251/72‑1 (MQ=255) aaGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCg < 2:2839412/72‑1 (MQ=255) aGTGCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCgg < 1:3030590/72‑1 (MQ=255) ttCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCgggg < 2:1495987/72‑1 (MQ=255) tCGCGCTGATCTGGAAAAAATCCTCNGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCCCgcggc > 1:1002400/1‑71 (MQ=39) tCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCggggg > 2:2198691/1‑71 (MQ=255) tCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGga > 1:1754577/1‑72 (MQ=255) cgcgCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGgag < 2:7356422/72‑1 (MQ=255) gcgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGgaga > 1:7527709/1‑72 (MQ=255) gcgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCCCgaggggg > 2:3111810/1‑69 (MQ=39) cgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGgagta > 1:769298/1‑70 (MQ=255) cgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGgaggg > 2:4953075/1‑70 (MQ=255) cgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGagag > 1:7853451/1‑72 (MQ=255) cgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCACCCTGGGgagtg > 2:2037678/1‑70 (MQ=38) cgcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGNCCCCTCGCCCCCTCGGGGagag > 1:2549324/1‑72 (MQ=255) gcTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGCTGAgg > 1:2253892/1‑72 (MQ=255) cTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAggg > 2:8797361/1‑72 (MQ=255) cTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCCCCGGGGGAggg > 2:8277119/1‑72 (MQ=38) gATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGNCCCCCCgggggggggggt > 1:3081302/1‑70 (MQ=38) gATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGGGAggggt > 2:5419817/1‑70 (MQ=255) gATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGtt > 2:3817991/1‑72 (MQ=255) gATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGtt < 2:2064470/72‑1 (MQ=255) agcTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTa < 2:6649549/70‑1 (MQ=255) aTCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTa > 1:1539810/1‑72 (MQ=255) aTCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTa > 2:704392/1‑72 (MQ=255) tcgggAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCCCCGGGCGCGGGGTAg > 2:3552128/4‑72 (MQ=37) cTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAgg < 1:2152946/72‑1 (MQ=255) cTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCCCGGGGAGGGGGGTAgg > 2:8330506/1‑72 (MQ=37) gAAAAATCCCTCGGCTAATCCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTg < 2:4433586/72‑1 (MQ=25) gAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAggggg > 1:1308966/1‑70 (MQ=255) gAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTg > 2:8768989/1‑72 (MQ=255) aaaaaaCCCCGGGCTAATCCGAAGGCCCGCAGGGACAGCCCCCTCGCCCCCTGGGGGAGGGGGTTAGGGTGa < 2:7765936/72‑1 (MQ=12) aaaaaTCCTCGGCTAATTCGAAA‑CCCCCACGGACCGGCCCCTCGCCCCCCCCGGGGGGGGGGTAGGGGGAgg > 2:6725355/1‑72 (MQ=255) aaaaTCCTCGGCTAATCCGAAAGCGCGCACGGACAGCCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTgggg < 2:818330/72‑1 (MQ=37) aaaTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAggg > 1:1702510/1‑72 (MQ=255) aaaTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAggg > 1:5198950/1‑72 (MQ=255) aaTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGTGAgggg > 2:8086462/1‑72 (MQ=255) aaTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGGGAgggg > 1:5025826/1‑72 (MQ=255) aTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGGGGGGGGTAGGGTggggggg > 1:6374923/1‑71 (MQ=37) aTCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGa > 1:2301729/1‑72 (MQ=255) ggCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGGGAGGGTTAGGGTGAGGGGAACAGGc > 2:4871966/1‑72 (MQ=255) ggCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGc > 2:2945134/1‑72 (MQ=255) ggCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGc > 1:8588331/1‑72 (MQ=255) cTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGccc > 2:6844154/1‑72 (MQ=255) aaTTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGc > 2:7873178/1‑72 (MQ=255) aTTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGGGTGGGGAAGAGGccccga > 2:6270051/1‑69 (MQ=21) tCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGcaca > 2:8900027/1‑72 (MQ=255) tCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGGGAGGGGGACAAGGCCGcgca > 2:2212635/1‑72 (MQ=18) gAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGTGAGGGGGACAGGCCCGcacacg > 1:4347600/1‑70 (MQ=25) aaaGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCACCAGc > 1:4666362/1‑72 (MQ=255) aaaGCGCGCACGGACAGTCCCCTCGCCCCCCCCGGGGGGGGGGTAGGGGGGGGGGGACAGGGCCGCACACGc > 1:5306617/1‑72 (MQ=16) aaGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGGTAGGGGGAGGGGAACAGGCCCGCCCAAGcc > 2:707706/1‑71 (MQ=21) aGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCCCAAGCaa > 1:6595426/1‑72 (MQ=255) cgcACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGGGGGGGAGAGGCCCGCCCAAGCAAACtt > 1:4743382/1‑72 (MQ=21) cACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCACAAGCAAACTTAt > 2:9142363/1‑72 (MQ=255) aCGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCCCAAGCAAACTTATc > 2:2926963/1‑72 (MQ=255) cGGACAGTCCCCTCGCCCCCTCGNGGGGAGGGGTAGGGTGAGGGGGACAGGCCCGCACAAGCAAACTTATCa > 1:5927480/1‑72 (MQ=25) | GACGGCACCAAGCCGGTTGCTGAAGTTCGCGCTGATCTGGAAAAAATCCTCGGCTAATTCGAAAGCGCGCACGGACAGTCCCCTCGCCCCCTCGGGGAGAGGGTTAGGGTGAGGGGAACAGGCCCGCACAAGCAAACTTATCA > NC_012967/469830‑469972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |