| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 469901 = | 176 (0.700) | 11 (0.060) | 7/104 | 12.2 | 9.0% | intergenic (+15/‑221) | adk/hemH | adenylate kinase/ferrochelatase |
| ? | NC_012967 | = 4210195 | 93 (0.500) | intergenic (+38/+95) | rluF/yjbD | 23S rRNA pseudouridine(2604) synthase RluF/DUF3811 domain‑containing protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 168 total aligned reads displayed.
TACCTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGA > NC_012967/4210124‑4210266 | tACCTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGcc > 2:5089787/1‑72 (MQ=255) acgtCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGccc < 1:8623043/69‑1 (MQ=255) aCCTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGccc > 2:4668625/1‑72 (MQ=255) aCCTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGccc > 1:2602031/1‑72 (MQ=255) ccgcGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCg < 1:4958151/69‑1 (MQ=255) ccTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCg < 2:4956765/72‑1 (MQ=255) cgcGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCgg < 1:7547491/70‑1 (MQ=255) tctccGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGa < 2:5947602/69‑1 (MQ=255) tCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGa > 1:2754148/1‑72 (MQ=255) tCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGa > 2:2078181/1‑72 (MQ=255) gcGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGa < 2:7443233/71‑1 (MQ=255) cGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGAc < 1:7676376/72‑1 (MQ=255) cGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGAc > 2:2615705/1‑72 (MQ=255) gCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACa > 1:5198954/1‑72 (MQ=255) gCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACa > 1:4543559/1‑72 (MQ=255) ccGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAg < 1:8809061/72‑1 (MQ=255) ccGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAg < 1:3627078/72‑1 (MQ=255) cGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGt > 1:7466821/1‑72 (MQ=255) cGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGt > 2:79980/1‑72 (MQ=255) cGGGGCGTAAAAAGAAGGGACGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGt < 1:2467397/72‑1 (MQ=255) ggggCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTc < 1:7495208/72‑1 (MQ=255) cGTAAAAGGAGGGGGCGCTGATTAACGCCTCAGACTGATGAGAACGGCCCAAAAGTGCCCGGACAGTCCCCt < 1:929092/72‑1 (MQ=38) cGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCt < 2:1793205/72‑1 (MQ=255) cGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCt > 2:4704519/1‑72 (MQ=255) cGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCt < 2:8586861/72‑1 (MQ=255) cGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCt > 1:6595484/1‑72 (MQ=255) gTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTc > 1:5872188/1‑72 (MQ=255) tAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCg > 1:2971823/1‑72 (MQ=255) aaaaGAGGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑cc < 1:5167667/72‑1 (MQ=255) aaaaGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑cc > 1:4427887/1‑72 (MQ=255) aaaaGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑cc > 2:7462697/1‑72 (MQ=255) aaaGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑ccc > 1:216985/1‑72 (MQ=255) aagaagGGGCGCTGATTAACGCCTCAGACTGATGAAACCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑cccc > 1:1498156/1‑72 (MQ=255) agaagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCt < 2:9103522/72‑1 (MQ=255) gaagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCGGGACAGTCCCCTCG‑CCCCtt < 1:3393797/72‑1 (MQ=255) gaagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCtt < 2:3455796/72‑1 (MQ=255) gaagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCtt < 1:8369340/72‑1 (MQ=255) gaagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCtt > 1:9004006/1‑72 (MQ=255) aagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTc < 2:5024174/72‑1 (MQ=255) aagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTc > 1:4487263/1‑72 (MQ=255) aagGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTc > 2:4740574/1‑72 (MQ=255) aacgggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTc < 2:3817688/69‑1 (MQ=255) agGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑g > 1:3851318/1‑72 (MQ=255) ggggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑gg < 1:3922012/72‑1 (MQ=255) ggggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑gg < 2:8404509/72‑1 (MQ=255) gggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑ggg < 2:6880290/72‑1 (MQ=255) ggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGa < 2:8015125/72‑1 (MQ=255) ggCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑gggg > 1:2764547/1‑71 (MQ=255) ggCGCTGACTAACGCATCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGa < 2:7088132/72‑1 (MQ=255) gcgcTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑tgggg > 1:5058203/1‑70 (MQ=255) gcgcTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGaa < 2:6312161/72‑1 (MQ=255) gcgcTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑cgggg > 2:2184151/1‑70 (MQ=37) cgcTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCNCGGACAGTCCCCTCG‑CCCCTTC‑GGGaaa < 2:3364127/72‑1 (MQ=255) cgcTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑ggggga > 2:5590762/1‑69 (MQ=255) gATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGGGAAggg > 2:7730641/1‑72 (MQ=255) gATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAggg < 1:3717831/72‑1 (MQ=255) aTTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGt < 2:7226732/72‑1 (MQ=255) aTTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑CGGGAAAgggg > 1:6210586/1‑71 (MQ=37) ttAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGtt < 2:4223065/72‑1 (MQ=255) tAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGGAAAGGGGTa > 1:198314/1‑72 (MQ=255) aaCGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCCTCC‑GGGGAAAggggcg > 2:8283048/1‑69 (MQ=25) aaCGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAg < 2:5385750/72‑1 (MQ=255) aaCGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAg < 2:1041713/72‑1 (MQ=255) aCGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAgg < 1:825153/72‑1 (MQ=255) gCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGt < 1:1213058/72‑1 (MQ=255) gCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGGTAGGGt > 1:6950616/1‑72 (MQ=255) ccacAGACTGATGAAAACGGCCAAAAAGTGCCCGGGCAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTg < 2:2564776/69‑1 (MQ=21) ccTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTg < 2:6810040/72‑1 (MQ=255) ccTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTg < 2:8147042/72‑1 (MQ=255) aaGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAgg < 2:1354939/71‑1 (MQ=255) gACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCCTCC‑GGGAAAAGGG‑TAgggggggggg > 1:1578292/1‑72 (MQ=21) aCTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGa < 1:9145829/72‑1 (MQ=255) aCTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGGTAGGGTGAGGGGa > 2:7154058/1‑72 (MQ=255) cTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGaa < 2:3714882/72‑1 (MQ=255) cTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑GGGGAAAGGGTTAGGGGGAggggga > 1:6741012/1‑70 (MQ=21) gatgaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCCTCC‑GGGGAAAGGGGTGgggggggggggga > 2:5047256/1‑69 (MQ=12) gatgaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGaaaa < 2:5920206/72‑1 (MQ=255) atgaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAAt < 1:7721309/72‑1 (MQ=255) gaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGGAAAAGGGTAGGGGGGGGGGGAAAAtg > 2:6419964/1‑71 (MQ=21) gaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATtg < 2:4301189/72‑1 (MQ=255) aaaaCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑CGGTACAAGGTTTGGGTGGGGGGGAAATtgt > 1:2020163/1‑72 (MQ=21) aaaaCGGCACAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATtgt < 2:2358530/72‑1 (MQ=255) aaCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGGAAACTgtgt > 2:7172808/1‑72 (MQ=255) aaCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑CGGGAAAGGGGGAGGGGGGGGGGGGAAATgtgt > 1:6780081/1‑72 (MQ=12) aCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGtt < 2:688507/72‑1 (MQ=255) aCGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGtt < 2:5251299/72‑1 (MQ=255) cGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTc < 2:5798067/72‑1 (MQ=255) acccAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTcac < 2:3091446/71‑1 (MQ=255) cAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACt < 1:4441640/72‑1 (MQ=255) cAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACt < 1:7995057/72‑1 (MQ=255) cAAAAGTGCCCGGACAGTCCCCTCG‑CCCCCTC‑GGGGAAAGGGGTAGGGTGAGGGGGAAAATGTGTTCACACt > 1:6313292/1‑72 (MQ=18) aaaaGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGGAAAAGGGTAGGGTGAGGGGAAAATTGTGTTCACAATg > 2:1798108/1‑72 (MQ=18) aaaaGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTg < 2:6690131/72‑1 (MQ=255) aaaaGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTg < 2:4304342/72‑1 (MQ=255) aaaaGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGCGTTCACACTg < 1:566427/72‑1 (MQ=255) aGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGGAAAGGGGTAGGGGGGGGGGGAAATTGTGGTCACACTGACg > 2:2207957/1‑72 (MQ=18) aGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACg < 1:5935871/72‑1 (MQ=255) tGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGTGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAg < 1:82509/72‑1 (MQ=255) gCCCGGACAGTCCCCTCG‑CCCCCTC‑GGGGAAAAGGGTAGGGGGGGGGGGGAATTGTGTTTACACTGGCGAgg > 1:4139593/1‑71 (MQ=12) cccGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTg < 2:2855951/72‑1 (MQ=255) | TACCTCGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTC‑GGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGA > NC_012967/4210124‑4210266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |