| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2066637 = | 181 (0.720) | 38 (0.180) +GTTGGCGCACAA |
7/118 | 15.6 | 22.0% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | = 4208344 | 145 (0.580) | intergenic (+51/+40) | yjbB/pepE | Na/Pi cotransporter family protein/dipeptidase PepE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2066674‑2066637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTAC < NC_012967/4208344‑4208307 |||||||||||| aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGC > 2:6421539/2‑72 CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTCGACGgg > 2:8252181/1‑70 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCT > 2:4365645/1‑63 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCT < 1:4365645/63‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCG > 2:4656541/1‑58 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCAC > 2:4047633/1‑45 AGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTT > 1:8211903/1‑36 CGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGA > 1:8006277/1‑48 GGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGGCCTATCAt > 1:1291381/1‑71 AAGGCGTTCCCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT < 1:3703062/72‑1 acGCGCTCCCGCCGCTTCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTA < 2:534046/70‑1 AGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAT < 2:6568778/64‑1 GCGTTCACGCCGCATCCGGCAGTTTGCGCACAATGCCTGATGCGACGCTTG < 2:4584679/51‑1 GCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTG > 1:4584679/1‑51 GTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGC > 2:6318919/1‑53 GTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAC > 2:6515483/1‑44 TCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAG < 2:7382091/61‑1 TCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAG > 1:7382091/1‑61 CACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCG > 2:6339974/1‑39 CACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGC > 1:4464190/1‑38 CACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGC < 2:4464190/38‑1 CACGCCGCATCCGGCAGTTGGCGCACAAAGCCTGATGCGAC > 2:1597286/1‑41 ACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCAGGCCTA > 2:6143932/1‑64 ACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTA < 1:6143932/64‑1 CGCCGCATCCGGCAGTTGGCGCACAATGCCTTATGCGACGCTTGACGCGTCTTATCAGGCC < 2:2550974/61‑1 GCATCCGGCAGTTGGCGCGCAATGCCTGATGCGACGCTTGAC < 1:1664550/42‑1 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCAGGCCT > 2:7699227/1‑58 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT < 1:7699227/58‑1 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTT > 2:8138694/1‑39 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTT < 1:8138694/39‑1 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGAC > 1:1294567/1‑35 GCATCCGGCAGTTGGCGCACAATGCCTGATGCGAC < 2:1294567/35‑1 CATCCGGCAGTTGGCGCACAATNCCTGATGCGACGCTTGACGCGTC < 1:5627629/46‑1 CATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGA < 2:8409352/40‑1 ATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT < 1:7594763/56‑1 ATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT > 2:7594763/1‑56 ATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCG < 1:5933042/43‑1 GGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCT < 1:3769905/42‑1 AGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGG < 2:371408/46‑1 AGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGG > 1:371408/1‑46 GTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTA > 2:3628919/1‑40 GTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTA < 1:3628919/40‑1 TGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTA < 2:6018878/38‑1 GGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTA < 2:6655240/37‑1 CGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTAC < 1:4135124/45‑1 |||||||||||| CCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2066674‑2066637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTAC < NC_012967/4208344‑4208307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |