| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2066637 = | 181 (0.720) | 38 (0.180) +GTTGGCGCACAA |
7/118 | 15.6 | 22.0% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | = 4208344 | 145 (0.580) | intergenic (+51/+40) | yjbB/pepE | Na/Pi cotransporter family protein/dipeptidase PepE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 146 total aligned reads displayed.
GAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCG > NC_012967/4208273‑4208415 | aagGAGGGGACGTGTATAAATTTTGTAAACCCTGTGGGCCTGATAAGACGCGTAAGGCGTCGCATCGGGCAc < 2:8591529/72‑1 (MQ=12) aagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCCGATAAGACGCGTCAAGCGTCGCACCAGGCAc > 1:5687208/1‑72 (MQ=255) agGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCCGATAAAAAACGGCAAACGGCGCCTCAGGGACt > 2:5482327/1‑72 (MQ=255) ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGTGTCAAGCGTCGCATCAGGCACTa > 1:240108/1‑72 (MQ=255) ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa > 2:8455344/1‑72 (MQ=255) gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCCGATAAAAAGCGTCAAACGTCGCCACAGGCAccaa > 1:2193627/1‑69 (MQ=255) gggacgAGTATTAATATTGTGAATCCTGTAGGTCTGATAAGACGCGTCAAGAGTCGCATAAGGCACTACGaa > 1:8351897/1‑72 (MQ=25) gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGAGTCGCATCAGGCACTATGaa > 2:7101063/1‑72 (MQ=255) aggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa < 2:4891365/71‑1 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc > 1:6592105/1‑72 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCCGATAAAACGCGGCAAAAGGCGCACCAGGGACGATGGAc > 2:3938212/1‑72 (MQ=255) gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACa > 1:1705349/1‑72 (MQ=255) gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAATATGaaaa > 1:4376326/1‑70 (MQ=255) acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTACGAACaa > 2:7199526/1‑72 (MQ=255) acgAGTATTAATATTGTGAATCCTGTAGGCCCGGTAACACGCGTCAAGCGCCGCGCCCTGGCCTATGAACaa > 1:1681636/1‑72 (MQ=255) acgACTATTAATATTGTGAATCCTGTAGGCCCGAGCCGACGCGTCCAACATAGGAACAGGGACTCCGAACaa > 2:5297304/1‑72 (MQ=255) gAGTATTAATATTGTGAATCCTGTAGGCCCGGTAAAACGCGTCCAACGTCGCCACCGGCACCCTGNACaaaa > 2:607678/1‑70 (MQ=255) aattATTAATATTGTGACTCCTGTAGGCCTGAAAAGACGCGTAAGGCGTCGCATCGGGCACTATGAACAAGa < 1:6095053/69‑1 (MQ=21) aatataAATATTGTGAATCCTGTAGGCCAAAAAAGACGCGTAAAGCTTCGAATCAGGCACTATGAACAAGAt < 2:6824107/70‑1 (MQ=21) aGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGAt < 2:8480769/72‑1 (MQ=255) tATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCCAGCGTCGCACCAGGCACTATGAACAAGAttc > 1:2249767/1‑70 (MQ=25) tATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc > 1:6714346/1‑72 (MQ=255) tATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCAACAGGCACCATGAACAAGAAGc > 2:2140309/1‑72 (MQ=25) ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCg < 1:7009356/72‑1 (MQ=255) ttAATATTGTGAATCCTGTAGGCCTGATAAAACGCGTCAAGCGGCGCATCCGGCACTATGAACAAAAAGccc > 1:4494016/1‑71 (MQ=21) ttAATATTGTAAATCCGGTAGGCGTGAAAAGCCGCGTCAGGCGTCGCATCGGGCACTATGAACAAGATGCCg < 2:8253820/72‑1 (MQ=255) tAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCgg > 1:2381311/1‑72 (MQ=255) tAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCgg > 1:8459698/1‑72 (MQ=255) aaTATTGTGAATCCTGTAGGCATGATAAGACGCGTCAAGCGTAGCATCAGGCACTATGAACAAGATGCCGGa < 1:5107222/72‑1 (MQ=25) attttGTAAATCGTGTGGCCCTGAAAGGCCGCGAAAGGGGTCGCATCGGGCACTATGAACAAGATGCCGGAt < 2:1573529/69‑1 (MQ=255) atatGGTAAACCCTGTGGCCCTAATAAGACGCGCAAGGCGTCGCATCGGGCACTATGAACAAGATGCCGGAt < 1:3508728/72‑1 (MQ=16) tatTGTGAATCCTGTATGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAAATGCCGGATc > 1:4592109/1‑72 (MQ=255) tatTGTGAATCCTGTAGGCCTGATAAAACGCGTCAAGCGTCGCATCAGGCACTATGAAAAAGAAGCCgggaa > 1:4043768/1‑69 (MQ=18) gAATCCTGTAGGCCCGATAAGACGCGTCAAACGTCGCAACAGGGACTATGAAAAAAAAGGCGGGTCATGCAt > 1:4830782/1‑72 (MQ=16) aacccTGTGCGCCTGAAAACACGCGGAAGGCTGCGCATCGGGCACTATGAACAAGATGCCGGATCATGCATc < 2:2826471/69‑1 (MQ=255) aaTCCTTTGGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATc < 1:8020408/72‑1 (MQ=255) aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGGCGGATCATGCATc > 1:8112430/1‑72 (MQ=255) aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATc > 2:8639994/1‑72 (MQ=255) aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATc > 2:7060311/1‑72 (MQ=255) aaTCCTGTAGGCCCGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGAAGCCGGGATATGCATc > 2:4609170/1‑72 (MQ=18) cccTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCg < 2:5967212/71‑1 (MQ=255) ccTGTAGGCCTGATAAGACGCGTCAAGCGTGGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCgg < 1:6781427/72‑1 (MQ=255) ccTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATcctg > 1:8301231/1‑70 (MQ=255) cTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc > 1:1725532/1‑72 (MQ=255) cTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc > 2:4719112/1‑72 (MQ=255) cTGTAGGCCTGATAAGACGCGTCAAGCGTCGAATCAGGCACTATGAACAAGATGCCGGGTCCTGCAACCggg > 2:5757729/1‑71 (MQ=18) tGTAGGCCTGATAAGACGCTTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCa < 2:4042091/72‑1 (MQ=255) tGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAACATGCATTCgggc > 2:4699235/1‑70 (MQ=21) tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAGGATGCCGGATCATGCATCCGGCAAt < 2:8338319/72‑1 (MQ=255) tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGGCGGATCATGGCTTCGGCaaa > 2:5849785/1‑71 (MQ=18) tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCCAt > 1:6079981/1‑72 (MQ=255) tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCAACCGGCAAt > 2:4414620/1‑72 (MQ=255) tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATCTATCCGGCAAt > 1:3049120/1‑72 (MQ=255) aGGCCTGATAAGACGCGTCAAGCGTGGCATCATGCACTATGATCAAGATGGTGGATCATGAATACGGCAAtt > 1:6178347/1‑72 (MQ=18) ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc > 1:1302012/1‑72 (MQ=255) ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc > 1:1493338/1‑72 (MQ=255) ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc > 1:5669599/1‑72 (MQ=255) cTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACt > 1:7940359/1‑72 (MQ=255) gATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTa > 1:8502869/1‑72 (MQ=255) gATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTa > 1:7198192/1‑72 (MQ=255) gATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCCGGACATGCATCCGGCAAATTACTTa > 2:3427552/1‑72 (MQ=25) tAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaa > 1:2506536/1‑72 (MQ=255) tAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAACTaaa > 2:4899747/1‑72 (MQ=255) aaGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaa > 1:113842/1‑72 (MQ=255) ataCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaaa > 1:5921319/3‑72 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACACGATGCCGGATCATGCATCCGGCAATTCACTTaaaaa > 1:6243665/1‑72 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaaa > 2:6661010/1‑72 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaaa > 1:3898985/1‑72 (MQ=255) cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTg > 1:8735440/1‑72 (MQ=255) cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTg > 1:1697350/1‑72 (MQ=255) cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTg > 2:7318830/1‑72 (MQ=255) cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCCGCAATTTACCTAAAAACCGTg > 2:7647198/1‑72 (MQ=37) gTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGa > 1:4816916/1‑72 (MQ=255) tCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAc > 1:6613646/1‑72 (MQ=255) tCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAc > 1:3160081/1‑72 (MQ=255) aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCa > 1:2854897/1‑72 (MQ=255) aGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAg > 1:4605067/1‑72 (MQ=255) gCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc > 2:4871341/1‑72 (MQ=255) gCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc > 1:3148611/1‑72 (MQ=255) tCGCATCAGGCACTATGAACAAGATGCCGGAGTCTGCATCCGGCAATTCACCTTAAAACGGTGTCCCGCCTc > 2:306863/1‑72 (MQ=255) cGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTTACCAGCTTcc > 1:2295978/1‑72 (MQ=255) cGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTcc > 1:310918/1‑72 (MQ=255) cATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAg > 1:6501982/1‑72 (MQ=255) aTCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc > 1:8625266/1‑72 (MQ=255) aTCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc > 1:4250090/1‑72 (MQ=255) aTCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc > 1:6883769/1‑72 (MQ=255) aTCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCCTCCAGc > 1:932586/1‑72 (MQ=255) tCAGGCACTATGAACAAGATGCCGGCTCATGCCTCCGGCGAGTCACTTAAAAACGGTTACCATCTTTCacgc > 2:6183119/1‑69 (MQ=255) cAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAACAGCTTCCAGCgg > 2:293188/1‑72 (MQ=255) cAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGGGACCAACTTCCAGCgg > 2:2145429/1‑72 (MQ=255) aGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa > 2:7005603/1‑72 (MQ=255) aGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa > 1:5084433/1‑72 (MQ=255) aGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa > 2:2501147/1‑72 (MQ=255) ggCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGaa < 1:4194003/72‑1 (MQ=255) gacACTATGAACAAGATGCCGGATCATACATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGaa < 2:6294111/70‑1 (MQ=255) cACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCCTCGGactc > 1:4347140/1‑69 (MQ=255) cACTAGGAACAAGATGCCGGATCATGCCTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAcc < 1:202980/72‑1 (MQ=255) aCTATGAACAAGCGGCCGGATCATGCGTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCg < 1:3444896/72‑1 (MQ=255) aCTATGAACAAGATGCCGGATCATGCATCGGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCg < 1:2387546/72‑1 (MQ=255) aCTATGAACAAGATGCCCGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCg > 2:7564458/1‑72 (MQ=255) | GAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCG > NC_012967/4208273‑4208415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |