| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2527115 = | 296 (1.180) | 5 (0.020) | 5/128 | 17.4 | 1.9% | coding (28/651 nt) | hyfE | hydrogenase 4 membrane subunit |
| ? | NC_012967 | = 4020488 | 249 (1.110) | coding (123/270 nt) | yihD | YihD family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2527192‑2527115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTTT < NC_012967/4020488‑4020418 GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCC > 1:8189372/1‑72GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCC > 2:8401002/1‑72GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCC < 2:7936943/72‑1GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCC < 1:348313/72‑1 GCGTAAAATCCGCATGACAGNCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTNCC < 2:806959/72‑1 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC < 1:7181116/72‑1 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC > 2:3581590/1‑72 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC > 2:3699818/1‑72 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC < 2:4480791/72‑1 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC < 1:4967037/72‑1 GCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCC < 1:5603953/72‑1 CGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCG < 2:7658797/72‑1 CGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCG < 1:529127/72‑1 GTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGC < 1:1036155/72‑1 TAAATTCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC < 1:4860638/72‑1 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC < 2:4473865/72‑1 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC > 2:43226/1‑72 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC > 2:5735336/1‑72 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC > 2:6121893/1‑72 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC > 2:1784918/1‑72 TAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCC < 1:7721984/72‑1 AAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCA < 2:4552195/72‑1 AAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG < 2:6685659/72‑1 AAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG > 1:1932035/1‑72 AAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG < 1:8180303/72‑1 AAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG > 1:5699230/1‑72 AAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG > 1:4107873/1‑72 CGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAGTTCGCAGTCAAAACCTGACTCTTT < 2:3622950/67‑1 CGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAGTTCGCAGTCAAAACCTGACTCTTT > 1:3622950/1‑67 aaCCCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGTAGGTTAAGGTCTG < 1:2789191/70‑1 aCCCGCCAGTGCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGG < 2:5295596/71‑1 gCCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGC < 2:3512838/71‑1 CCCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGC < 1:5680057/72‑1 CCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCT < 1:6947001/72‑1 CCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCT < 2:6068816/72‑1 CCGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCT < 2:7774089/72‑1 CGCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCANCAGGTTAAGGTCTGGCTC > 1:3406072/1‑72 GCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCNNTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTTGCTCT > 1:3348651/1‑72 GCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCT > 1:7314975/1‑72 GCCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCT > 1:5782445/1‑72 CCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTT > 2:7758131/1‑72 CCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTT < 1:315702/72‑1 CCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTT < 2:933599/72‑1 CCAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTT < 2:2684417/72‑1 CAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTT > 2:3172228/1‑72 CAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTT > 2:7477453/1‑72 CAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTT > 1:789236/1‑72 CAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTT > 1:8336489/1‑72 CAGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTT > 2:7902672/1‑72 CAGTTCGCAGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGNTCTTT > 2:778591/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 1:8047951/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 2:6645661/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 2:2966062/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 1:7958040/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 2:7027726/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 2:1080252/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTT > 1:3249691/1‑72 AGTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAA‑TGCAGCCGGTTAAGGGCTGGGTCTTTTT > 2:7744088/1‑72 GTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTTT < 1:5753961/72‑1 GTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTTT > 2:6899675/1‑72 GTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTTT > 1:6893415/1‑72 GGCGTAAAATCCGCATGACAGGCGATAGCTTTTGACGCTAATCACAAACAGTGATGTCAGCATCATCAGTCCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2527192‑2527115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagTTCGCCGTCAAAACCTGACTCTTTCGCCAGTTTCTGCAAAAATTGCAGCAGGTTAAGGTCTGGCTCTTTTT < NC_012967/4020488‑4020418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |