| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2527115 = | 296 (1.180) | 5 (0.020) | 5/128 | 17.4 | 1.9% | coding (28/651 nt) | hyfE | hydrogenase 4 membrane subunit |
| ? | NC_012967 | = 4020488 | 249 (1.110) | coding (123/270 nt) | yihD | YihD family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 301 total aligned reads displayed.
TCCAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTT > NC_012967/2527044‑2527186 | tCCAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATc > 1:6850759/1‑72 (MQ=255)tCCAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATc > 2:1591705/1‑72 (MQ=255) ccAGCGTAATCGCCTCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCt < 2:118401/72‑1 (MQ=255) ccAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCt < 1:7164016/72‑1 (MQ=255) ccAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCt < 2:4370584/72‑1 (MQ=255) cAGCGTATTCGCGGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTg < 1:5376131/72‑1 (MQ=255) cAGCGTAATCGCNGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTg < 1:948828/72‑1 (MQ=255) aGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTgg > 1:3789157/1‑72 (MQ=255) cGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCg < 2:3557108/72‑1 (MQ=255) agTAATCGCCGCGACCTGGTGTTAGTAAGGAGATGAGGAGGGACCGGTTCTATGATCGTAAATAATCTGGCg < 2:3137217/71‑1 (MQ=255) gTAATCGCCTCAACCGGGTGTTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCgg < 2:1057714/72‑1 (MQ=255) gTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCgg > 1:204658/1‑72 (MQ=255) gTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACAGGTTCTATGATCGTAAATAATCTGGCgg > 2:6811372/1‑72 (MQ=255) attCGCCGCGACCTGTTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGa < 1:5172560/70‑1 (MQ=255) aTCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGAc < 2:2626601/72‑1 (MQ=255) aTCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGAc < 2:6610290/72‑1 (MQ=255) tCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACt < 1:4877813/72‑1 (MQ=255) ncnccgnNACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACt > 2:5905106/2‑72 (MQ=255) cgccgcGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACtg > 2:8508602/1‑72 (MQ=255) gccgcGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACtga > 2:7666009/1‑72 (MQ=255) cgctACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACtgatg < 2:4197916/72‑1 (MQ=255) gcgACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACtgatga < 2:5015656/72‑1 (MQ=255) gcgACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACtgatga < 1:8457057/72‑1 (MQ=255) cgACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTgatgat > 2:1865701/1‑72 (MQ=255) gACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAAAAATCTGGCGGGACTGatgatg > 2:8773603/1‑72 (MQ=255) gACCGGGTTGTAGTAAGGAGATCATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGatgatg < 1:3888372/72‑1 (MQ=255) aCCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGc < 1:3085008/72‑1 (MQ=255) aCCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGc > 1:1528768/1‑72 (MQ=255) ccTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCt < 1:6611243/72‑1 (MQ=255) ccTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCt < 1:4599658/72‑1 (MQ=255) ccTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCt > 2:5059928/1‑72 (MQ=255) cTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTg > 1:3293321/1‑72 (MQ=255) ggTTGTAGTAAGGAGATGATGGATGACCGGTTCTATGATCGTAAATAATCTGGGGGGACTGATGATGCTGAc < 2:216713/72‑1 (MQ=255) ggTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATNCTGAc > 2:777240/1‑72 (MQ=255) ttGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACAt > 2:7089927/1‑72 (MQ=255) ttGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACAt > 2:6717467/1‑72 (MQ=255) tGTAGTAAGGAGATTATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATc > 1:7977150/1‑72 (MQ=255) tGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATc < 2:6935248/72‑1 (MQ=255) gtagtaAGGAGATGATGAATGACCGGCTCTATGATCGTAAATAATCTGGCGTGACTGATGATGCTGACacan > 1:1022461/1‑69 (MQ=255) gtaAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGCCATCACTg > 2:2661461/1‑72 (MQ=255) gtaAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTg < 1:1652762/72‑1 (MQ=255) taAGGAGATGATGAATGCCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTgn > 2:3276339/1‑71 (MQ=255) taAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGt < 2:6481574/72‑1 (MQ=255) taAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGt < 1:6696504/72‑1 (MQ=255) taAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGAGGCTGACATCACTGt > 2:1745305/1‑72 (MQ=255) aaGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGtt < 1:7733278/72‑1 (MQ=255) aGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGttt < 1:8233408/72‑1 (MQ=255) aGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGttt > 1:4262343/1‑72 (MQ=255) ggAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTtg < 1:124783/72‑1 (MQ=255) gagaTGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTtgt < 2:1134729/72‑1 (MQ=255) agaTGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGGCATCACTGTTtgtg < 2:4588986/72‑1 (MQ=255) gatgatGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGa > 2:7816534/1‑72 (MQ=255) atgatgAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGAt > 1:7537128/1‑72 (MQ=255) tgatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGAtt < 2:5206274/72‑1 (MQ=255) gatgaATGACCGGTTCTATGATCGTAAATAATCTGTGGGGACTGATGATGCTGACATCACTGTTTGTGATTa < 1:4732118/72‑1 (MQ=255) gatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTa < 2:4739215/72‑1 (MQ=255) gatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTa > 1:1934299/1‑72 (MQ=255) angaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTNTTTGTGATTAg < 1:862763/72‑1 (MQ=255) tgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGc < 2:403286/72‑1 (MQ=255) gaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCg < 2:5398487/72‑1 (MQ=255) atgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTc > 1:1762354/1‑72 (MQ=255) tgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCa < 2:2985739/72‑1 (MQ=255) gaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCaa > 1:7889286/1‑72 (MQ=255) gaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCaa > 1:3246976/1‑72 (MQ=255) aCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCaaa > 1:8167488/1‑72 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAg > 2:8021565/1‑72 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAg < 1:6029205/72‑1 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAg > 1:780973/1‑72 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAg > 2:8171563/1‑72 (MQ=255) ggTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGc > 2:7506392/1‑72 (MQ=255) ggTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGc < 2:1326711/72‑1 (MQ=255) ggTTCTATGACCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGc > 2:2308150/1‑72 (MQ=255) gTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCt < 1:3600545/72‑1 (MQ=255) gTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCt < 2:3758162/72‑1 (MQ=255) ttCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTa < 1:3514432/72‑1 (MQ=255) tCTATGATCGTAAATAATCTGGCTGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTAt > 1:1499845/1‑72 (MQ=255) tCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTAt > 2:2839252/1‑72 (MQ=255) cTATGATCGTAAATAATCTGGCTGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGTTATc > 1:1915141/1‑72 (MQ=255) cTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATc < 1:6170399/72‑1 (MQ=255) aTGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGc < 2:5776006/72‑1 (MQ=255) tGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGcc > 1:7632075/1‑72 (MQ=255) tCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGt < 1:6754904/72‑1 (MQ=255) tCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGt > 1:5321405/1‑72 (MQ=255) tAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCAt > 1:7380190/1‑72 (MQ=255) tAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCAt < 2:359466/72‑1 (MQ=255) tAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCAt > 1:2193499/1‑72 (MQ=255) aaaTAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATg < 1:2536000/72‑1 (MQ=255) aataatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGc < 2:5611699/72‑1 (MQ=255) aataatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGc > 2:6860434/1‑72 (MQ=255) ataatCTGGCTGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCg < 2:7231137/72‑1 (MQ=255) ataatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAACGCTATCGCCTGTCATGCg > 1:2948347/1‑72 (MQ=255) ataatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCg < 2:7388412/72‑1 (MQ=255) ataatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCg < 2:1487541/72‑1 (MQ=255) taatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCgg < 2:8265105/72‑1 (MQ=255) taatCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCgc > 2:3671104/1‑71 (MQ=255) atCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAt < 1:6903893/72‑1 (MQ=255) atCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAt > 2:6050759/1‑72 (MQ=255) tCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAtt < 2:2485626/72‑1 (MQ=255) cTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAttt < 1:4107873/72‑1 (MQ=255) cTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAttt < 1:5699230/72‑1 (MQ=255) | TCCAGCGTAATCGCCGCGACCTGGTTGTAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCACTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTT > NC_012967/2527044‑2527186 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |