| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 203 (0.810) | 51 (0.250) | 38/114 | 5.7 | 25.7% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 133 (0.660) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 183 total aligned reads displayed.
CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 | ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 1:7954995/72‑1 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 1:8262880/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 2:7241844/1‑72 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:6146545/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa > 2:5680797/1‑72 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 1:630766/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:1122508/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 1:371505/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 1:6443676/1‑72 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa > 1:5959673/1‑72 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa < 2:825082/72‑1 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa > 1:2464333/1‑72 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa > 1:6104134/1‑72 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa < 2:5564806/72‑1 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa < 1:1811129/72‑1 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa < 1:7631823/72‑1 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAcc < 2:7123138/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc < 1:8684491/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc > 2:3504539/1‑72 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc > 1:1604477/1‑72 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAcac > 2:3986681/1‑70 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa < 2:3588325/72‑1 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa < 2:2816335/72‑1 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAt < 2:3435227/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATc < 1:1221062/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATc > 1:5030684/1‑72 (MQ=255) aTCGTTAAAAGACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAGC‑a < 1:6793329/72‑1 (MQ=255) aTCGTTAAAAAACAGTTCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAAC‑a > 1:5208828/1‑72 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAttt < 1:828823/72‑3 (MQ=255) gcGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑aa > 1:1737218/2‑72 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 2:5675983/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 1:793840/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 1:8721131/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAcc < 2:4139314/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCt < 2:8401674/72‑1 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑g < 1:6199252/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAAc < 2:6837631/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAAc > 2:8329655/1‑72 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAAc < 2:2510446/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCACGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑Taaa > 2:3412976/1‑71 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCGACAAAAAACCCATC‑AACCTT‑GAAcc < 1:8474670/72‑1 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAAcc > 2:6394208/1‑72 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCg < 1:7437872/72‑1 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAACTT‑GAACCg > 1:2619007/1‑72 (MQ=255) cAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGa > 1:6953046/1‑72 (MQ=255) cAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGa < 2:7424621/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCCTC‑AACCTT‑GTACCGaa > 2:2998137/1‑72 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGaa > 2:7492490/1‑72 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑TAAACGaaa > 2:1544419/1‑72 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGaaa > 2:6587755/1‑72 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAAt < 1:1926900/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAAt > 2:507802/1‑72 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTG‑GAACCGAAAt < 1:554308/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAACCT‑TAACTGAAAt > 2:1504618/1‑72 (MQ=255) tcTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATg < 2:2081363/71‑1 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑TAACCGAAATg > 1:1315037/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATg > 1:6667672/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATg < 2:8102754/72‑1 (MQ=255) tCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑g > 1:7660343/1‑72 (MQ=255) tCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑g > 2:2060593/1‑72 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAANCCATC‑AACCTT‑GAACCGAAATGGC‑gggg < 2:3209084/72‑1 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑gggg < 2:455121/72‑1 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAACCT‑TAACCCAAAAGGC‑gggg > 1:4695180/1‑72 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGCAATGGC‑ggggg > 2:3838691/1‑71 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑ggggg > 2:2896052/1‑71 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGt < 2:3747393/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGt < 1:3537393/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGtt < 1:7553607/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGtt < 2:4629635/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGtt < 2:5046726/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGCAATGGC‑gggggtt > 1:8623968/1‑69 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGGTg > 2:7358720/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGa > 2:6808073/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCACCAAACCTT‑AAACCCAAAAGgg‑ggggggg > 1:5248952/1‑69 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCCT‑GAAACGAAAATGC‑GGGGGTGag > 1:3830142/1‑71 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATg < 2:6997555/72‑1 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGGTGATg > 1:8101981/1‑72 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAACCCCTC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCt > 1:341062/1‑72 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCt < 1:244074/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑TAACCGCAATGGC‑GGGGGTGGTGGGcgc > 1:4204767/1‑70 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTc < 2:4762208/72‑1 (MQ=255) tAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCca > 1:220908/1‑72 (MQ=255) agagCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGCAATGGC‑GGGGGTGGTGGGGTCCCCaa > 1:2960980/1‑72 (MQ=255) gagCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACaaa < 1:2333399/72‑1 (MQ=255) aacATAAATTACAGGCAACAAAAAACCAATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACaaaa < 1:1628307/70‑1 (MQ=255) gCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGGTGATGGGCTCCCCcaaaa > 1:4768928/1‑71 (MQ=255) gCAAAAATTACGGGAAACAAAAACCCCACA‑ACCCTG‑GAACCGAAGGGGG‑GGGGTTGAGGGGCTCCACAAAAt < 2:2135101/72‑1 (MQ=255) acATAAATCACAGAAAAAAAAAAAGCCATC‑ACCCTG‑GACCAAAAGGGGC‑GGGGTTGGGGGGCTCCACAAAAt < 1:3486827/71‑1 (MQ=255) cATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑AGGGGTGAAGGGCTCCACCAAATg > 1:76485/1‑72 (MQ=255) cATAAATTTCAGGCAACAAAAAACCCATC‑AACCCT‑GAACCGAAATGGC‑GGGGGTGATGGGGCCCCCaaaaag > 2:2326443/1‑70 (MQ=255) aTAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCGCCACCAAATgc > 2:6677598/1‑71 (MQ=255) aaaaTTTCAGGCAAAAAAAACCCCATC‑ACCCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATggg < 1:1822210/71‑1 (MQ=255) aaaTTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGGTGATGGGCTCCACAAAATtggg > 1:8420222/1‑72 (MQ=255) aTTTCAGGCAACAAAAAACCCATC‑CACCTT‑GAACCGAAAAGGC‑GGGGGTGATGGGGTCCACCAAAAAGGGAc > 1:2675986/1‑72 (MQ=255) aTTTCAGGCAACAAAAAACCCATC‑AACCTT‑TAACCGAAATGGC‑GGGGGTGGAGGGGTCCACAAAATggggga > 1:1974125/1‑70 (MQ=255) tgcAGGCAACAAAAAACCCATC‑GACCGT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACAt < 1:7142150/70‑1 (MQ=255) aGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCaa < 1:8743318/72‑1 (MQ=255) ggCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGCGGGGGTTGA‑GGGGTCCCCCAAATGGGGGGATCaaa > 2:2243763/1‑72 (MQ=255) agCAAAAAAAACCCCCAC‑CACCTTAGAACCAAAATGGG‑GGGGTTGAGGGGCTCCACAAAATGGGGACATCaa < 1:7565898/71‑1 (MQ=255) caacaaAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGGTGATGGGGTCCACAAAAAGGGGACAACAAAGa > 1:7261726/1‑72 (MQ=255) | CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTT‑GAACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |