New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002094 = 25978132 (1.320)9 (0.090)
+TA		 7/192 11.4 6.6% intergenic (+2/‑10) LLNZ_t13263/LLNZ_t13265 tRNA‑Phe/tRNA‑Gly
?CP002094 = 2500912 127 (1.270)intergenic (‑1/+35) LLNZ_t13375/LLNZ_t13377 tRNA‑Tyr/tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP002094/25928‑25978
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGAAGGGTAGCGAAG‑‑A‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGGGGTTCGAATCC‑CTCCCCTT  <  CP002094/2500912‑2500834
                                                   ||                                                                                    
CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCG                                      <  2:1492300/99‑1
    GGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCC                                  <  2:262844/99‑1
                   GTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGT                   <  2:365799/99‑1
                    TGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTT                  <  2:138329/99‑1
                        GGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAA              <  2:553270/99‑1
                         GCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAAT             >  1:605039/1‑99
                            GTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCa          <  1:229048/99‑2
                             TTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCac         <  2:1300887/99‑3
                                    CCGTCCCGCGCCATTTATGGAGGGGTAGCGAAG‑‑TCTGGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCACTCCCCTc  >  2:905533/1‑98
                                                   ||                                                                                    
CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP002094/25928‑25978
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGAAGGGTAGCGAAG‑‑A‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGGGGTTCGAATCC‑CTCCCCTT  <  CP002094/2500912‑2500834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.