New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP002094 | = 518215 | 104 (1.040) | 9 (0.090) +TA |
7/192 | 11.4 | 7.4% | intergenic (+2/‑9) | LLNZ_t13313/LLNZ_t13315 | tRNA‑Phe/tRNA‑Gly |
? | CP002094 | = 2500912 | 127 (1.270) | intergenic (‑1/+35) | LLNZ_t13375/LLNZ_t13377 | tRNA‑Tyr/tRNA‑Val | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP002094/518165‑518215 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGAAGGGTAGCGAAG‑‑A‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGGGGTTCGAATCC‑CTCCCCTT < CP002094/2500912‑2500834 || CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCG < 2:1492300/99‑1 GGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCC < 2:262844/99‑1 GTGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGT < 2:365799/99‑1 TGTCGGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTT < 2:138329/99‑1 GGCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAA < 2:553270/99‑1 GCGGTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAAT > 1:605039/1‑99 GTTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCa < 1:229048/99‑2 TTCGATTCCGTCCCGCGCCATTTATGGAGGGGTAGCGAAGTCT‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCac < 2:1300887/99‑3 CCGTCCCGCGCCATTTATGGAGGGGTAGCGAAG‑‑TCTGGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGTGGTTCGAATCCACTCCCCTc > 2:905533/1‑98 || CAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP002094/518165‑518215 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGAAGGGTAGCGAAG‑‑A‑‑GGCTAAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTTCGGGGGTTCGAATCC‑CTCCCCTT < CP002094/2500912‑2500834 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |