| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP002094 | = 1321880 | 56 (0.560) | 4 (0.050) | 4/148 | 11.2 | 7.8% | intergenic (‑192/+485) | LLNZ_06960/LLNZ_06965 | xanthine phosphoribosyltransferase/hypothetical protein |
| ? | CP002094 | 1381355 = | 53 (0.710) | intergenic (‑458/+78) | LLNZ_07275/LLNZ_07280 | hypothetical protein/guanosine 5'‑monophosphate oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACAATTTAA > CP002094/1321784‑1321964 | aGAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATtat > 1:682305/1‑99 (MQ=255)aGAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATtat > 1:998152/1‑99 (MQ=255)aGAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATtat > 2:914904/1‑99 (MQ=255) gAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATtata > 1:1354534/1‑99 (MQ=255) gAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATtata > 2:680855/1‑99 (MQ=255) aaattaaattTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTatat > 1:592155/1‑99 (MQ=255) aattaaattTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATAtt < 2:1337390/99‑1 (MQ=255) aattaaattGACAAAAAAATCGATTTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATAtt < 1:287275/99‑1 (MQ=255) ttaaattTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTcc > 2:1137590/1‑99 (MQ=255) aattTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCAc > 1:335126/1‑99 (MQ=255) attTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACg > 1:1189758/1‑99 (MQ=255) ttACTGAAAAATCGAATTTCCTTATTTTCTCGCATTTACGGTACGAGGTAGAACCCCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGt < 1:1241971/99‑1 (MQ=255) ttACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGt > 1:395404/1‑99 (MQ=255) tGAAAAATCGAATTTCCTTATTGTTTCGCATTTACGGTCCGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTtta < 2:1292662/99‑1 (MQ=255) tGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTtta < 2:1447150/99‑1 (MQ=255) gAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTttat < 2:1214634/99‑1 (MQ=255) aaaaaTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTttatt > 1:728095/1‑99 (MQ=255) aaaaTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTttatta > 2:544764/1‑99 (MQ=255) aaaTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTaa < 2:1428660/99‑1 (MQ=255) aTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAAcc < 1:1533168/99‑1 (MQ=255) aTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAAcc > 1:1379244/1‑99 (MQ=255) aTCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAAcc < 1:1223250/99‑1 (MQ=255) gAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCtgt < 2:1188866/99‑1 (MQ=255) aaTTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCtgtg > 2:950042/1‑99 (MQ=255) aaTTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCtgtg > 2:203090/1‑99 (MQ=255) aaTTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCtgtg > 2:56251/1‑99 (MQ=255) ttCTTTTTTGTCTCGATTTTAGGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGaaa < 2:1636894/99‑1 (MQ=25) ttCCTTATTGTCTCGCATTTACGGTACGAGGCAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGaaa > 1:1601707/1‑99 (MQ=255) ccTTATTGTCTCGCATTTACGGTACGAGGTAGAAACCCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATa < 1:928878/99‑1 (MQ=255) tATTTTCCCGCATTCACGGTACGAGGTAAAAACCCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGta < 1:768657/99‑1 (MQ=21) aTTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGtat < 1:25839/99‑1 (MQ=255) aTTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGtat > 2:473411/1‑99 (MQ=255) ttGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGtatt > 1:1077461/1‑99 (MQ=255) ttGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGtatt > 1:8996/1‑99 (MQ=255) ttGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGtatt > 1:1467265/1‑99 (MQ=255) aCGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTc > 1:546055/1‑99 (MQ=255) cGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCa < 2:1399826/99‑1 (MQ=255) gTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATa < 2:1361618/99‑1 (MQ=255) gTACGAGGTAAAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATa < 1:641117/99‑1 (MQ=255) aGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAAt > 2:60678/1‑99 (MQ=255) ggTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAAtt > 2:216015/1‑99 (MQ=255) gTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATACTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAAttt < 1:1550211/99‑1 (MQ=255) tAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTc > 2:1298072/1‑99 (MQ=255) aaaCGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGt > 1:76880/1‑99 (MQ=255) aaaCGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGt < 1:55215/99‑1 (MQ=255) aCGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGtaa > 1:225733/1‑99 (MQ=255) aCGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGtaa > 1:748884/1‑99 (MQ=255) cGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGtaat > 1:1608846/1‑99 (MQ=255) ccAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATaaa > 2:1053776/1‑99 (MQ=255) cAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATaaaa < 1:1616659/99‑1 (MQ=255) cATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGa > 2:1636530/1‑99 (MQ=255) tatTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAAc > 1:1605090/1‑99 (MQ=40) atTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACa > 2:387314/1‑99 (MQ=39) tCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACAAt < 1:1027848/99‑1 (MQ=37) cTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACAAtt < 1:1380661/99‑1 (MQ=35) ggTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACAATTTaa > 2:504741/1‑99 (MQ=32) | AGAAATTAAATTTACTGAAAAATCGAATTTCCTTATTGTCTCGCATTTACGGTACGAGGTAGAAACGCCCAGCCATATTCTAGGTATAAATAAGATTATATTCCCACGGTTTTATTAACCTGTGAAATAGTATTATATCAAAATTTCATAGAAATTTCAGTAATAAAATCGAACAATTTAA > CP002094/1321784‑1321964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |