New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP002094	= 1321880	56 (0.560)	4 (0.050)	4/148	11.2	7.8%	intergenic (‑192/+485)	LLNZ_06960/LLNZ_06965	xanthine phosphoribosyltransferase/hypothetical protein
	?	CP002094	1381355 =	53 (0.710)					intergenic (‑458/+78)	LLNZ_07275/LLNZ_07280	hypothetical protein/guanosine 5'‑monophosphate oxidoreductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCATTC  >  CP002094/1381259‑1381451                                                                                                 |                                                                                                 cTATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGtt                                                                                                >  2:116902/1‑99 (MQ=255) cTATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGtt                                                                                                <  1:1458755/99‑1 (MQ=255)  tATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTc                                                                                               <  2:807151/99‑1 (MQ=255)  tATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTc                                                                                               <  1:1221627/99‑1 (MQ=255)  tATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTc                                                                                               <  2:432111/99‑1 (MQ=255)  tATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTc                                                                                               <  1:156441/99‑1 (MQ=255)  tATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTc                                                                                               <  1:156263/99‑1 (MQ=255)    tCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCta                                                                                             >  1:739745/1‑99 (MQ=255)    tCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCta                                                                                             >  1:1392643/1‑99 (MQ=255)     ccATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCtat                                                                                            <  1:1045915/99‑1 (MQ=255)      cATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCtatt                                                                                           >  2:956136/1‑99 (MQ=255)       aTTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCtatta                                                                                          <  2:491981/99‑1 (MQ=255)       aTTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCtatta                                                                                          <  2:280777/99‑1 (MQ=255)         tttGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATtata                                                                                        <  1:363825/99‑1 (MQ=255)           tGATATAGTTGTTCTTCTGAAAATATTAATGTGTTTAAAATACCGTTATTTCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGa                                                                                      <  1:818292/99‑1 (MQ=255)            gATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGAc                                                                                     >  2:1494969/1‑99 (MQ=255)             atatAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACt                                                                                    >  2:1434988/1‑99 (MQ=255)              tataGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTa                                                                                   >  2:731560/1‑99 (MQ=255)              tataGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTa                                                                                   >  1:1654236/1‑99 (MQ=255)                  gTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATa                                                                               >  1:1395052/1‑99 (MQ=255)                   ttGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATAc                                                                              <  1:653494/99‑1 (MQ=255)                       aCTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTaaa                                                                          <  2:150241/99‑1 (MQ=255)                         ttCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGt                                                                        >  1:135061/1‑99 (MQ=255)                         ttCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGt                                                                        <  1:159076/99‑1 (MQ=255)                          tCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGtt                                                                       <  2:563573/99‑1 (MQ=255)                          tCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGtt                                                                       <  1:1391639/99‑1 (MQ=255)                            tGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGtttt                                                                     >  2:853529/1‑99 (MQ=255)                               aaaTATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCa                                                                  >  2:24645/1‑99 (MQ=255)                                 atatAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAg                                                                <  2:1317802/99‑1 (MQ=255)                                 atatAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAg                                                                <  1:1263912/99‑1 (MQ=255)                                    taAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCAt                                                             >  2:858129/1‑99 (MQ=255)                                    taAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCAt                                                             >  2:1504640/1‑99 (MQ=255)                                    taAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCAt                                                             >  2:1044909/1‑99 (MQ=255)                                      aaTGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATaa                                                           >  2:1306927/1‑99 (MQ=255)                                         gtgtTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGtt                                                        <  2:739429/99‑1 (MQ=255)                                         gtgtTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGtt                                                        <  2:135061/99‑1 (MQ=255)                                           gtTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGtttt                                                      <  2:1417854/99‑1 (MQ=255)                                             ttAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTgg                                                    <  1:525136/99‑1 (MQ=255)                                                aaaTACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTAt                                                 <  2:830878/99‑1 (MQ=255)                                                aaaTACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTAt                                                 >  1:966306/1‑99 (MQ=255)                                                  aTACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTc                                               >  1:967899/1‑99 (MQ=255)                                                  aTACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTc                                               >  1:1643434/1‑99 (MQ=255)                                                     ccGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCg                                            >  1:914052/1‑99 (MQ=255)                                                          attaCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACaa                                       >  2:762273/1‑99 (MQ=255)                                                           ttaCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAAt                                      >  2:102828/1‑99 (MQ=255)                                                           ttaCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAAt                                      <  1:926719/99‑1 (MQ=255)                                                           ttaCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAAt                                      >  1:856269/1‑99 (MQ=255)                                                           ttaCGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAAt                                      >  2:845495/1‑99 (MQ=255)                                                                cTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGgaa                                 >  1:677308/1‑99 (MQ=255)                                                                cTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGgaa                                 >  2:1410373/1‑99 (MQ=255)                                                                  ttttttGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGgaaag                               >  2:142638/1‑99 (MQ=255)                                                                      ttGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGaaaa                           <  1:1434988/99‑1 (MQ=255)                                                                       tGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAAt                          >  1:1090875/1‑99 (MQ=255)                                                                         cATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGc                        >  2:905795/1‑99 (MQ=255)                                                                         cATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGc                        <  2:570626/99‑1 (MQ=255)                                                                         cATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGc                        >  1:1078839/1‑99 (MQ=255)                                                                          atatTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCt                       >  2:308659/1‑99 (MQ=255)                                                                           tatTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCtt                      >  2:917979/1‑99 (MQ=255)                                                                           tatTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCAAACAATGGGAAAGAAAATGCtt                      >  1:1494384/1‑99 (MQ=255)                                                                             ttCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTAc                    >  1:1543352/1‑99 (MQ=255)                                                                             ttCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTAc                    <  1:1593230/99‑1 (MQ=255)                                                                                tAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTaa                 >  1:641195/1‑99 (MQ=255)                                                                                 aGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTaaa                <  2:411035/99‑1 (MQ=255)                                                                                 aGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTaaa                >  2:140045/1‑99 (MQ=255)                                                                                   gTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATa              >  1:1192792/1‑99 (MQ=255)                                                                                    tataAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAg             >  2:1242144/1‑99 (MQ=255)                                                                                      taaataaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCa           <  2:1601143/99‑1 (MQ=255)                                                                                      taaataaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCa           >  1:1271837/1‑99 (MQ=255)                                                                                      taaataaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCa           <  2:164032/99‑1 (MQ=255)                                                                                       aaataaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCAt          <  2:1236294/99‑1 (MQ=255)                                                                                         ataaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCa        >  1:1329853/1‑99 (MQ=255)                                                                                          taaGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCAc       >  2:598489/1‑99 (MQ=255)                                                                                             gATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCAt    <  2:670305/99‑1 (MQ=255)                                                                                             gATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCAt    >  2:1420085/1‑99 (MQ=255)                                                                                              aTTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCAtt   >  2:909345/1‑99 (MQ=255)                                                                                              aTTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCAtt   <  2:1601368/99‑1 (MQ=255)                                                                                               ttGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCATTc  >  1:776289/1‑99 (MQ=255)                                                                                                 |                                                                                                 CTATCCATTTTGATATAGTTGTACTTCTGAAAATATAAATGTGTTTAAAATACCGTTATTACGCTTTTTTTGCATATTCTAGGTATAAATAAGATTGTTCTATTATAGACTAAATACTAAAGTTTTTCAAGCATAAGTTTTGGTATTCCCGAACAATGGGAAAGAAAATGCTTACTAAATAGCATCACCATTC  >  CP002094/1381259‑1381451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.