Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP002094 308,346 (AGC)3→2 coding (412‑414/1080 nt) LLNZ_01685 ← multidrug‑efflux transporter protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP002094 308339 308341 3 110 [1] [0] 113 LLNZ_01685 multidrug‑efflux transporter protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002094 308342 =0 (0.000)104 (1.120) 68/182 0.2 100% coding (418/1080 nt) LLNZ_01685 multidrug‑efflux transporter protein
?CP002094 = 308338 0 (0.000)coding (422/1080 nt) LLNZ_01685 multidrug‑efflux transporter protein

Only 100 of 110 total aligned reads displayed.

GCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAA  >  CP002094/308242‑308435
                                                                                                   |                                                                                                 
gCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGGCTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAca                                                                                                 >  2:292733‑M2/1‑97 (MQ=255)
 cAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcag                                                                                                <  1:550820‑M2/99‑4 (MQ=255)
    gggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcag                                                                                             <  2:750308‑M2/99‑7 (MQ=255)
     ggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagc                                                                                            >  1:939222‑M2/1‑92 (MQ=255)
     ggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagc                                                                                            <  1:1344501‑M2/99‑8 (MQ=255)
      gagaTGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGGCAAGAAAATTTTTCccaacacaaacaaaa                                                                                              >  1:1565064/1‑96 (MQ=255)
        gatgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgt                                                                                         <  2:632302‑M2/99‑11 (MQ=255)
         atgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtc                                                                                        >  1:387910‑M2/1‑88 (MQ=255)
          tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtcc                                                                                       <  2:817394‑M2/99‑13 (MQ=255)
          tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtcc                                                                                       <  1:903594‑M2/99‑13 (MQ=255)
          tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtcc                                                                                       <  1:1155475‑M2/99‑13 (MQ=255)
           gatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtcca                                                                                      >  1:1290573‑M2/1‑86 (MQ=255)
           gatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtcca                                                                                      >  1:908530‑M2/1‑86 (MQ=255)
            atTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccat                                                                                     <  1:635289‑M2/99‑15 (MQ=255)
            atTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccat                                                                                     >  1:899413‑M2/1‑85 (MQ=255)
             ttGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatc                                                                                    >  2:1296835‑M2/1‑84 (MQ=255)
               gCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccg                                                                                  >  2:1134684‑M2/1‑82 (MQ=255)
                     agaaagagggggCCTAATTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatact                                                                            >  1:72995‑M2/5‑76 (MQ=255)
                     aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatact                                                                            <  2:1149695‑M2/99‑24 (MQ=255)
                     aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatact                                                                            <  1:232448‑M2/99‑24 (MQ=255)
                     aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatact                                                                            >  1:792611‑M2/1‑76 (MQ=255)
                       gTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttt                                                                          <  2:1257329‑M2/99‑26 (MQ=255)
                       gTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttt                                                                          <  2:254317‑M2/99‑26 (MQ=255)
                         aGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttg                                                                        >  2:1609747‑M2/1‑72 (MQ=255)
                         aGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttg                                                                        >  2:407379‑M2/1‑72 (MQ=255)
                          gAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgt                                                                       <  1:860313‑M2/99‑29 (MQ=255)
                          gAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgt                                                                       <  2:1643313‑M2/99‑29 (MQ=255)
                           aaGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgtt                                                                      <  2:948955‑M2/99‑30 (MQ=255)
                           aaGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgtt                                                                      >  1:1590723‑M2/1‑70 (MQ=255)
                            aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttc                                                                     >  2:1164280‑M2/1‑69 (MQ=255)
                            aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttc                                                                     <  1:1528989‑M2/99‑31 (MQ=255)
                            aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttc                                                                     <  1:638115‑M2/99‑31 (MQ=255)
                             ggggACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcg                                                                    <  2:233363‑M2/99‑32 (MQ=255)
                                gACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgatt                                                                 >  1:721769‑M2/1‑65 (MQ=255)
                                 aCTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattt                                                                >  1:1300791‑M2/1‑64 (MQ=255)
                                 aCTGAATTTCCAAAATGGGCTAGGAGGCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattt                                                                >  1:1077109‑M2/1‑64 (MQ=255)
                                    gAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttct                                                             >  2:371928‑M2/1‑61 (MQ=255)
                                     aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAccgcagttgtccatccgaatacttttgttcgattttctt                                                            <  2:1221501‑M2/99‑40 (MQ=255)
                                     aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt                                                            <  2:163671‑M2/99‑40 (MQ=255)
                                     aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt                                                            <  1:1563224‑M2/99‑40 (MQ=255)
                                     aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt                                                            >  2:678893‑M2/1‑60 (MQ=255)
                                     aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTGGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgagtacttttgttcgattttatt                                                            <  2:522960‑M2/99‑40 (MQ=255)
                                      aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc                                                           >  2:1542907‑M2/1‑59 (MQ=255)
                                      aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc                                                           <  1:1413906‑M2/99‑41 (MQ=255)
                                      aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc                                                           <  1:643716‑M2/99‑41 (MQ=255)
                                      aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc                                                           <  2:443137‑M2/99‑41 (MQ=255)
                                      aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagatgtccatccgaatacttttgttcgattttcttc                                                           >  1:750308‑M2/1‑59 (MQ=255)
                                       tttCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttca                                                          >  2:57073‑M2/1‑58 (MQ=255)
                                        ttCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAGCACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat                                                         >  1:634290‑M2/1‑57 (MQ=255)
                                        ttCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat                                                         >  1:1094819‑M2/1‑57 (MQ=255)
                                        ttCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat                                                         >  1:242352‑M2/1‑57 (MQ=255)
                                        ttCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat                                                         >  1:212933‑M2/1‑57 (MQ=255)
                                           cAAAATGGGCTAGGAGTCCCCCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcag                                                      >  1:558992‑M2/1‑54 (MQ=255)
                                           cAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtgcatccgaatacttttgttcgattttcttcatcag                                                      >  1:450931‑M2/1‑54 (MQ=255)
                                           cAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcag                                                      >  2:56780‑M2/1‑54 (MQ=255)
                                           aaaaatGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatccttttgttcgattttcttcatcag                                                      >  2:683802‑M2/2‑54 (MQ=255)
                                              aaTGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaa                                                   >  2:1653741‑M2/1‑51 (MQ=255)
                                               aTGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaat                                                  <  2:661938‑M2/99‑50 (MQ=255)
                                               aTGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaat                                                  <  1:1183996‑M2/99‑50 (MQ=255)
                                                 gggCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatat                                                >  1:1358015‑M2/1‑48 (MQ=255)
                                                 gggCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatat                                                >  2:1576195‑M2/1‑48 (MQ=255)
                                                  ggCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatc                                               <  2:1216436‑M2/99‑53 (MQ=255)
                                                  ggCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatc                                               >  1:868682‑M2/1‑47 (MQ=255)
                                                    cTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg                                             <  2:1187446‑M2/99‑55 (MQ=255)
                                                    cTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg                                             >  2:364750‑M2/1‑45 (MQ=255)
                                                     tAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggc                                            <  1:1010864‑M2/99‑56 (MQ=255)
                                                     tAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggc                                            <  1:668769‑M2/99‑56 (MQ=255)
                                                       ggAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcga                                          >  2:1590503‑M2/1‑42 (MQ=255)
                                                         aGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaa                                        >  2:1018967‑M2/1‑40 (MQ=255)
                                                          gTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagccgctgtccatccgaatacttttgttcgattttcttcatcagtaatatctgtgaaat                                       <  2:25825‑M2/99‑61 (MQ=255)
                                                          gTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaat                                       >  2:1512510‑M2/1‑39 (MQ=255)
                                                            ccaccaACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataa                                     >  2:731681‑M2/1‑37 (MQ=255)
                                                             ctccaccGGTTGGGCCATAAATTCTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataag                                    >  2:1069313‑M2/3‑36 (MQ=255)
                                                             caccaACGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccacccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataag                                    >  1:529655‑M2/1‑36 (MQ=255)
                                                                 aaCGGTTGGGCCAGAAATTGGTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaa                                >  1:636913‑M2/1‑32 (MQ=255)
                                                                  aCGGTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaa                               <  1:1255676‑M2/99‑69 (MQ=255)
                                                                     gTTGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagt                            >  2:138804‑M2/1‑28 (MQ=255)
                                                                      ttGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtactatcggcgaaataagcgaaaagtg                           <  2:1019313‑M2/99‑73 (MQ=255)
                                                                       tGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgt                          >  2:397006‑M2/1‑26 (MQ=255)
                                                                       tGGGCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgt                          >  2:1458034‑M2/1‑26 (MQ=255)
                                                                         gggCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtc                         >  2:1217109‑M2/1‑25 (MQ=255)
                                                                         gggCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtc                         >  1:233363‑M2/1‑25 (MQ=255)
                                                                          ggCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtgatatcggcgaaataagcgaaaagtgtca                        <  1:502796‑M2/99‑76 (MQ=255)
                                                                          ggCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtca                        >  1:632302‑M2/1‑24 (MQ=255)
                                                                          ggCCAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtca                        <  1:980374‑M2/99‑76 (MQ=255)
                                                                             cAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg                                             >  1:703013‑M2/1‑21 (MQ=255)
                                                                             cAGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg                                             <  2:703013‑M2/75‑55 (MQ=255)
                                                                              aGAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgat                    <  2:757791‑M2/99‑80 (MQ=255)
                                                                               gAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgata                   <  1:254216‑M2/99‑81 (MQ=255)
                                                                               gAAATTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgata                   >  1:835347‑M2/1‑19 (MQ=255)
                                                                                 aaaTTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatat                  >  2:1379975‑M2/1‑18 (MQ=255)
                                                                                   aTTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatgtcggcgaaataagcgaaaagtgtcacgatattt                <  1:366470‑M2/99‑84 (MQ=255)
                                                                                   aTTGTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatattt                >  1:642184‑M2/1‑16 (MQ=255)
                                                                                      gTTCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttcca             >  2:1358253‑M2/1‑13 (MQ=255)
                                                                                       ttCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccac            >  1:1257329‑M2/1‑12 (MQ=255)
                                                                                        tCCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccacc           <  2:577561‑M2/99‑89 (MQ=255)
                                                                                             acacgaacagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccaccggtt       <  1:603171‑M2/99‑93 (MQ=255)
                                                                                                 gaacagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccaccggttaagc   >  2:1183996‑M2/2‑3 (MQ=255)
                                                                                                  aacagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccaccggttaagcc  >  1:451296‑M2/1‑2 (MQ=255)
                                                                                                  aacagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccaccggttaagcc  <  1:1027587‑M2/99‑98 (MQ=255)
                                                                                                   |                                                                                                 
GCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAA  >  CP002094/308242‑308435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.