Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP002094 308,346 (AGC)3→2 coding (412‑414/1080 nt) LLNZ_01685 ← multidrug‑efflux transporter protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP002094 308339 308341 3 110 [1] [0] 113 LLNZ_01685 multidrug‑efflux transporter protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002094 308342 =0 (0.000)104 (1.120) 68/182 0.2 100% coding (418/1080 nt) LLNZ_01685 multidrug‑efflux transporter protein
?CP002094 = 308338 0 (0.000)coding (422/1080 nt) LLNZ_01685 multidrug‑efflux transporter protein

Only 100 of 113 total aligned reads displayed.

AGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCAT  >  CP002094/308245‑308440
                                                                                                 |                                                                                                  
gcaagggagatgattgctccaaagtagaaggggactgaatttccaaaatgggctagggctccaccaacggttgggccagaaattgttccaacacgaaca                                                                                                   >  2:292733‑M1/98‑99 (MQ=255)
 caagggagatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaacag                                                                                                  <  1:550820‑M1/3‑1 (MQ=255)
    gggagatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaacagcag                                                                                               <  2:750308‑M1/6‑1 (MQ=255)
     ggagatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCagcagc                                                                                              >  1:939222‑M1/93‑99 (MQ=255)
     ggagatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCagcagc                                                                                              <  1:1344501‑M1/7‑1 (MQ=255)
        gatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttctaacacgaaCAGCAGCTGt                                                                                           >  1:578121‑M1/90‑99 (MQ=255)
        gatgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGt                                                                                           <  2:632302‑M1/10‑1 (MQ=255)
         atgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTc                                                                                          >  1:387910‑M1/89‑99 (MQ=255)
          tgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTcc                                                                                         <  1:1155475‑M1/12‑1 (MQ=255)
          tgattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTcc                                                                                         <  2:817394‑M1/12‑1 (MQ=255)
           gattgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCa                                                                                        >  1:908530‑M1/87‑99 (MQ=255)
            attgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCAt                                                                                       >  1:899413‑M1/86‑99 (MQ=255)
            attgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCAt                                                                                       <  1:635289‑M1/14‑1 (MQ=255)
             ttgctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATc                                                                                      >  2:1296835‑M1/85‑99 (MQ=255)
                ctccaaagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGa                                                                                   >  2:272612‑M1/82‑99 (MQ=255)
                     agaaagagggggcctaattttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACt                                                                              >  1:72995‑M1/77‑99 (MQ=255)
                     aagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACt                                                                              >  1:792611‑M1/77‑99 (MQ=255)
                     aagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACt                                                                              <  1:232448‑M1/23‑1 (MQ=255)
                     aagtagaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACt                                                                              <  2:1149695‑M1/23‑1 (MQ=255)
                         agaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTg                                                                          >  2:1609747‑M1/73‑99 (MQ=255)
                         agaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTg                                                                          >  2:407379‑M1/73‑99 (MQ=255)
                          gaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGt                                                                         <  2:1643313‑M1/28‑1 (MQ=255)
                          gaaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGt                                                                         <  1:860313‑M1/28‑1 (MQ=255)
                           aaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGtt                                                                        <  2:948955‑M1/29‑1 (MQ=255)
                           aaggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGtt                                                                        >  1:1590723‑M1/71‑99 (MQ=255)
                            aggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTc                                                                       <  1:638115‑M1/30‑1 (MQ=255)
                            aggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTc                                                                       <  1:1528989‑M1/30‑1 (MQ=255)
                            aggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTc                                                                       >  2:1164280‑M1/70‑99 (MQ=255)
                             ggggactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCg                                                                      <  2:233363‑M1/31‑1 (MQ=255)
                                gactgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGAtt                                                                   >  1:721769‑M1/66‑99 (MQ=255)
                                 actgaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGAttt                                                                  >  1:1300791‑M1/65‑99 (MQ=255)
                                 actgaatttccaaaatgggctaggaggccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGAttt                                                                  >  1:1077109‑M1/65‑99 (MQ=255)
                                    gaatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttct                                                               >  2:371928‑M1/62‑99 (MQ=255)
                                     aatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCCGCAGTTGTCCATCCGAATACTTTTGTTCGATTttctt                                                              <  2:1221501‑M1/39‑1 (MQ=255)
                                     aatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttctt                                                              <  2:163671‑M1/39‑1 (MQ=255)
                                     aatttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttctt                                                              <  1:1563224‑M1/39‑1 (MQ=255)
                                     aatttccaaaatgggctaggagtccaccaacggtggggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAGTACTTTTGTTcgattttatt                                                              <  2:522960‑M1/39‑4 (MQ=255)
                                      atttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttcttc                                                             <  1:643716‑M1/40‑1 (MQ=255)
                                      atttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttcttc                                                             <  1:1413906‑M1/40‑1 (MQ=255)
                                      atttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTttcttc                                                             >  2:1542907‑M1/60‑99 (MQ=255)
                                      atttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGATGTCCATCCGAATACTTTTGTTCGATTttcttc                                                             >  1:750308‑M1/60‑99 (MQ=255)
                                       tttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTtca                                                            >  2:57073‑M1/59‑99 (MQ=255)
                                        ttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccagcacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTtcat                                                           >  1:634290‑M1/58‑99 (MQ=255)
                                        ttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTtcat                                                           >  1:1094819‑M1/58‑99 (MQ=255)
                                        ttccaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTtcat                                                           >  1:242352‑M1/58‑99 (MQ=255)
                                           caaaatgggctaggagtcccccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAg                                                        >  1:558992‑M1/55‑99 (MQ=255)
                                           caaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAg                                                        >  1:1320857‑M1/55‑99 (MQ=255)
                                           caaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAg                                                        >  2:56780‑M1/55‑99 (MQ=255)
                                           aaaaatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATCCTTTTGTTCGATTTTCTTCATCAg                                                        >  2:683802‑M1/55‑99 (MQ=255)
                                              aatgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTaa                                                     >  2:1653741‑M1/52‑99 (MQ=255)
                                               atgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAat                                                    <  1:1183996‑M1/49‑1 (MQ=255)
                                               atgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAat                                                    >  2:593299‑M1/51‑99 (MQ=255)
                                               atgggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAat                                                    <  2:661938‑M1/49‑1 (MQ=255)
                                                 gggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAatat                                                  >  2:1576195‑M1/49‑99 (MQ=255)
                                                 gggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAatat                                                  >  1:1358015‑M1/49‑99 (MQ=255)
                                                  ggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATc                                                 >  1:868682‑M1/48‑99 (MQ=255)
                                                  ggctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATc                                                 <  2:1216436‑M1/52‑1 (MQ=255)
                                                    ctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCgg                                               <  2:1187446‑M1/54‑1 (MQ=255)
                                                    ctaggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCgg                                               >  2:364750‑M1/46‑99 (MQ=255)
                                                     taggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGc                                              <  1:668769‑M1/55‑1 (MQ=255)
                                                     taggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGc                                              <  1:1010864‑M1/55‑1 (MQ=255)
                                                       ggagtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGa                                            >  2:1590503‑M1/43‑99 (MQ=255)
                                                         agtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGaaa                                          >  2:1018967‑M1/41‑99 (MQ=255)
                                                          gtccaccaacggttgggccagaaattgttccaacacgaaCAGCCGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCTGTGAAAt                                         <  2:25825‑M1/60‑1 (MQ=255)
                                                          gtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAAt                                         <  2:1194617‑M1/60‑1 (MQ=255)
                                                          gtccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAAt                                         >  2:1512510‑M1/40‑99 (MQ=255)
                                                            ccaccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATaa                                       >  2:731681‑M1/38‑99 (MQ=255)
                                                             ctccaccggttgggccataaattcttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAg                                      >  2:1069313‑M1/37‑99 (MQ=255)
                                                             caccaacggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCACCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAg                                      >  1:529655‑M1/37‑99 (MQ=255)
                                                                 aacggttgggccagaaattggtccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGaa                                  >  1:636913‑M1/33‑99 (MQ=255)
                                                                  acggttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGaaa                                 <  1:1255676‑M1/68‑1 (MQ=255)
                                                                     gttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAgt                              >  2:138804‑M1/29‑99 (MQ=255)
                                                                      ttgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTACTATCGGCGAAATAAGCGAAAAgtg                             <  2:1019313‑M1/72‑1 (MQ=255)
                                                                       tgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAgtgt                            >  2:1458034‑M1/27‑99 (MQ=255)
                                                                       tgggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAgtgt                            >  2:397006‑M1/27‑99 (MQ=255)
                                                                        gggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTc                           >  2:1217109‑M1/26‑99 (MQ=255)
                                                                        gggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTc                           >  1:233363‑M1/26‑99 (MQ=255)
                                                                        gggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGAGTc                           <  1:239075‑M1/74‑1 (MQ=255)
                                                                         ggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTGATATCGGCGAAATAAGCGAAAAGTGTCa                          <  1:502796‑M1/75‑1 (MQ=255)
                                                                         ggccagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCa                          <  1:980374‑M1/75‑1 (MQ=255)
                                                                            cagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCgg                                               >  1:703013‑M1/22‑75 (MQ=255)
                                                                            cagaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCgg                                               <  2:703013‑M1/54‑1 (MQ=255)
                                                                             agaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGat                      <  2:757791‑M1/79‑1 (MQ=255)
                                                                              gaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGata                     >  1:835347‑M1/20‑99 (MQ=255)
                                                                              gaaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGata                     <  1:254216‑M1/80‑1 (MQ=255)
                                                                               aaattgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGatat                    >  2:1379975‑M1/19‑99 (MQ=255)
                                                                                 attgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATGTCGGCGAAATAAGCGAAAAGTGTCACGATAttt                  <  1:366470‑M1/83‑1 (MQ=255)
                                                                                 attgttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATAttt                  >  1:642184‑M1/17‑99 (MQ=255)
                                                                                    gttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCa               >  2:1358253‑M1/14‑99 (MQ=255)
                                                                                     ttccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCAc              >  1:1257329‑M1/13‑99 (MQ=255)
                                                                                      tccaacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCAcc             <  2:577561‑M1/88‑1 (MQ=255)
                                                                                          acacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGtt         <  1:603171‑M1/92‑1 (MQ=255)
                                                                                          acacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGAGTCCCGATATTTCCACCGGtt         <  1:916588‑M1/92‑1 (MQ=255)
                                                                                              gaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGc     >  2:1183996‑M1/4‑99 (MQ=255)
                                                                                               aaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGcc    <  1:1027587‑M1/97‑1 (MQ=255)
                                                                                               aaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGcc    >  1:451296‑M1/3‑99 (MQ=255)
                                                                                               aaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGcc    <  2:153507‑M1/97‑1 (MQ=255)
                                                                                                 CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCAt  >  1:405247‑M1/1‑99 (MQ=255)
                                                                                                 CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCAt  <  2:537857‑M1/99‑1 (MQ=255)
                                                                                                 CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCAt  >  2:34082‑M1/1‑99 (MQ=255)
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AGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCAT  >  CP002094/308245‑308440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑