New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP002094	= 1041795	1 (0.010)	96 (0.970)	65/194	0.5	99.0%	coding (128/570 nt)	LLNZ_05610	hypothetical protein
	?	CP002094	= 1205670	NA (NA)					intergenic (‑57/‑15)	LLNZ_06350/LLNZ_06355	hypothetical protein/hypothetical protein

TAAGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAGAAC  >  CP002094/1205574‑1205767                                                                                                 |                                                                                                  tAAGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAg                                                                                                 <  2:558647/99‑1 (MQ=31)    gggTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGAt                                                                                              <  1:1288997/99‑1 (MQ=34)          cTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCaaa                                                                                        >  2:1377727/1‑99 (MQ=255)           tttAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCaaaa                                                                                       >  1:377140/1‑99 (MQ=255)            ttAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAAt                                                                                      <  1:201595/99‑1 (MQ=255)              aaaTTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTa                                                                                    >  2:1017175/1‑99 (MQ=255)                 ttCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGa                                                                                 >  2:594534/1‑99 (MQ=255)                 ttCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGa                                                                                 >  2:868530/1‑99 (MQ=255)                     tttGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCa                                                                             >  2:484178/1‑99 (MQ=255)                      ttGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCaa                                                                            <  2:273577/99‑1 (MQ=255)                         aGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAaata                                                                         <  1:1585902/99‑1 (MQ=255)                           tAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAaataat                                                                       >  1:1127282/1‑99 (MQ=255)                           tAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAaataat                                                                       >  1:531807/1‑99 (MQ=255)                           tAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAaataat                                                                       <  1:152276/99‑1 (MQ=255)                           tAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAaataat                                                                       >  2:911254/1‑99 (MQ=255)                            aGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAataata                                                                      <  2:1032527/99‑1 (MQ=255)                             gCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATAc                                                                     >  2:1646989/1‑99 (MQ=255)                               gTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTa                                                                   <  2:599184/99‑1 (MQ=255)                                tttttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTaa                                                                  <  1:433479/99‑1 (MQ=255)                                tttttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTaa                                                                  <  1:94728/99‑1 (MQ=255)                                tttttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTaa                                                                  <  1:1658006/99‑1 (MQ=255)                                    tGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGAt                                                              <  1:211032/99‑1 (MQ=255)                                    tGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGAt                                                              <  1:119741/99‑1 (MQ=255)                                      cATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATaa                                                            <  2:1509078/99‑1 (MQ=255)                                       aTGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAg                                                           >  1:1327326/1‑99 (MQ=255)                                        tGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATa                                                             <  1:1457130/96‑1 (MQ=255)                                        tGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATa                                                             >  2:1457130/1‑96 (MQ=255)                                                tCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAattat                                                  <  1:1460553/99‑1 (MQ=255)                                                 ccTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAattatt                                                 <  2:1031302/99‑1 (MQ=255)                                                   tttGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTAtttt                                               <  1:756253/99‑1 (MQ=255)                                                     tGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCg                                             <  2:819864/99‑1 (MQ=255)                                                      gTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGt                                            <  1:168224/99‑1 (MQ=255)                                                       tCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTc                                           <  1:479170/99‑1 (MQ=255)                                                         tAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCt                                         <  2:906671/99‑1 (MQ=255)                                                          aaaTTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCtt                                        <  2:894662/99‑1 (MQ=255)                                                          aaaTTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCtt                                        <  1:1448082/99‑1 (MQ=255)                                                           aaTTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCttt                                       <  2:1632760/99‑1 (MQ=255)                                                           aaTTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCttt                                       >  1:1135003/1‑99 (MQ=255)                                                            aTTATACAATAGTGACTCTAACATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTa                                      >  2:802257/1‑99 (MQ=255)                                                              tataCAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATc                                    >  1:915612/1‑99 (MQ=255)                                                                       gTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTAt                           >  2:21330/1‑99 (MQ=255)                                                                         gACTCTAAGATTTAAGGATAACATCAGGATTTCAAAAGTATGATTCAAAAAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGAAAATTagat                         <  2:865680/99‑4 (MQ=39)                                                                           ctctAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGa                       >  2:1118509/1‑99 (MQ=255)                                                                             ctAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGc                     <  1:78378/99‑1 (MQ=255)                                                                               aaGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCaa                   <  2:447598/99‑1 (MQ=255)                                                                                 gATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAAt                 <  1:919929/99‑1 (MQ=255)                                                                                  aTTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATg                <  1:133381/99‑1 (MQ=255)                                                                                   tttAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATgg               >  1:408965/1‑99 (MQ=255)                                                                                   tttAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATgg               >  1:497213/1‑99 (MQ=255)                                                                                    ttAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGt              <  1:355059/99‑1 (MQ=255)                                                                                        ggATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTaaa          <  2:398364/99‑1 (MQ=255)                                                                                        ggATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTaaa          <  1:1528084/99‑1 (MQ=255)                                                                                          aTAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACa        <  1:782137/99‑1 (MQ=255)                                                                                          aTAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACa        <  2:277010/99‑1 (MQ=255)                                                                                          aTAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACa        <  1:1184388/99‑1 (MQ=255)                                                                                             aCATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAg     >  2:293152/1‑99 (MQ=255)                                                                                             aCATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAg     >  2:253621/1‑99 (MQ=255)                                                                                             aCATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAg     <  1:902642/99‑1 (MQ=255)                                                                                             aCATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAg     >  2:1030105/1‑99 (MQ=255)                                                                                             aCATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAg     <  2:1396265/99‑1 (MQ=255)                                                                                              cATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAGa    <  1:1604912/99‑1 (MQ=255)                                                                                               aTCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAGaa   <  1:1214832/99‑1 (MQ=255)                                                                                                tCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAGAAc  <  2:1200622/99‑1 (MQ=255)                                                                                                 |                                                                                                  TAAGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAGGATTTCAAAATTATGATTCAAATAATACTAACGATAAGTACAATTATTTTCGTCCTTTATCGACAATTATCTGAGCAAATGGTTAAACATAGAAC  >  CP002094/1205574‑1205767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.