| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 254279 = | 3 (0.070) | 43 (1.060) | 32/98 | 0.2 | 93.5% | coding (407/1281 nt) | tagH | type VI secretion system‑associated FHA domain protein TagH |
| ? | NC_017635 | 985471 = | NA (NA) | intergenic (+12/+8) | ECW_RS04805/ECW_RS04810 | phage tail protein/IS3 family transposase | |||||
TGGCCACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/254327‑254279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTATC > NC_017635/985471‑985519 TGGCCACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACT < 1:1530372/50‑1 GGCCACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTG > 2:418795/1‑50 agCACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTG < 2:891630/47‑1 CACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAG < 1:160669/50‑1 CACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAG < 1:1533514/50‑1 ACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGT < 1:1095844/50‑1 ACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGT < 2:1462535/50‑1 ACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGT > 1:1110793/1‑50 CTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTG < 2:2046655/50‑1 CTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTG > 1:1155044/1‑50 CGAAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCA < 2:1571847/50‑1 AAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAG > 1:2043331/1‑50 AAACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAG > 2:136007/1‑50 ACCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGT > 1:310168/1‑49 CCATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAA > 2:193390/1‑50 ATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATA < 2:1701334/50‑1 ATCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATA < 2:1562384/50‑1 TCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATAT < 2:1999592/50‑1 TCGTTACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATAT < 2:1521185/50‑1 TACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGC > 1:15477/1‑50 TACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGC > 2:692888/1‑50 TACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGC > 1:485007/1‑50 ACCAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGC < 1:1669921/49‑1 CAATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCAC > 1:2041003/1‑50 ATCGCGATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGG > 1:2036221/1‑50 GATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTA > 2:1047672/1‑50 ATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTA > 1:1691425/1‑49 ATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTA > 2:519681/1‑49 ATATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTA > 2:1606562/1‑49 TATGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACA < 2:471701/50‑1 TGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGT < 1:726626/50‑1 TGCTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAG > 1:1866919/1‑49 CTCACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTA > 2:637671/1‑49 CACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAA > 1:1651112/1‑49 ACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAA < 1:2057377/50‑1 ACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAA > 2:223568/1‑50 ACGGATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAA < 2:459596/49‑1 GATACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGG > 1:1091648/1‑50 TACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTA > 2:286694/1‑50 ACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTAT > 2:1526317/1‑50 ACTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTAT > 1:146931/1‑50 CTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTATC > 2:670210/1‑50 CTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTAT < 2:666359/49‑1 TGGCCACTCCCGAAACCATCGTTACCAATCGCGATATGCTCACGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/254327‑254279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAAAAATGGTATC > NC_017635/985471‑985519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |