| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 254279 = | 3 (0.070) | 43 (1.060) | 32/98 | 0.2 | 93.5% | coding (407/1281 nt) | tagH | type VI secretion system‑associated FHA domain protein TagH |
| ? | NC_017635 | 985471 = | NA (NA) | intergenic (+12/+8) | ECW_RS04805/ECW_RS04810 | phage tail protein/IS3 family transposase | |||||
CCGGTGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTGGCCA > NC_017635/254230‑254327 | gataccatttttactgtaaaaccgtggccaatattacttgaccactacag > 2:670210‑M1/50‑50 (MQ=255)ccGGTGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAggg > 2:747287/1‑50 (MQ=255) ataccatttttactgtaaaaccgtggccaatattacttgaccactacag < 2:666359‑M1/1‑1 (MQ=255) ataccatttttactgtaaaaccgtggccaatattacttgaccactacaGt > 1:146931‑M1/49‑50 (MQ=255) ataccatttttactgtaaaaccgtggccaatattacttgaccactacaGt > 2:1526317‑M1/49‑50 (MQ=255) taccatttttactgtaaaaccgtggccaatattacttgaccactacaGTa > 2:286694‑M1/48‑50 (MQ=255) ggTGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTa < 1:409187/50‑1 (MQ=255) ggTGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTa > 2:1136601/1‑50 (MQ=255) tGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 1:1887825‑M1/1‑49 (MQ=255) tGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 1:1275549‑M1/1‑49 (MQ=255) tGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 2:877310‑M1/1‑49 (MQ=255) ccatttttactgtaaaaccgtggccaatattacttgaccactacaGTATc > 1:1091648‑M1/46‑50 (MQ=255) gAGTCATTCCCGGATAGTGTGGCGTGCCCTCCGTTGATAGCAGGGTATg > 2:630135‑M1/1‑48 (MQ=255) gAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 1:952656‑M1/1‑48 (MQ=255) gAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 2:1295464‑M1/1‑48 (MQ=255) aGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgta < 1:1145350‑M1/50‑4 (MQ=255) aGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgta < 2:608345‑M1/50‑4 (MQ=255) aGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATg > 2:832281‑M1/1‑47 (MQ=255) tttttactgtaaaaccgtggccaatattacttgaccactacaGTATCCGt > 2:223568‑M1/43‑50 (MQ=255) tttttactgtaaaaccgtggccaatattacttgaccactacaGTATCCGt < 1:2057377‑M1/8‑1 (MQ=255) ttttactgtaaaaccgtggccaatattacttgaccactacaGTATCCGt < 2:459596‑M1/8‑1 (MQ=255) tttactgtaaaaccgtggccaatattacttgaccactacaGTATCCGTg > 1:1651112‑M1/41‑49 (MQ=255) cATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtg > 1:1659067‑M1/1‑44 (MQ=255) cATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtg > 1:1299651‑M1/1‑44 (MQ=255) aTTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtgg > 1:622189‑M1/1‑43 (MQ=255) ttCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggc < 2:86710‑M1/50‑9 (MQ=255) tactgtaaaaccgtggccaatattacttgaccactacaGTATCCGTGAg > 2:637671‑M1/39‑49 (MQ=255) actgtaaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCa < 1:726626‑M1/13‑1 (MQ=255) ctgtaaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCa > 1:1866919‑M1/37‑49 (MQ=255) tgtaaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCata < 2:471701‑M1/15‑1 (MQ=255) ccGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcaca < 2:873808‑M1/50‑12 (MQ=255) cGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacac > 1:614751‑M1/1‑38 (MQ=255) taaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCatat > 2:1606562‑M1/34‑49 (MQ=255) taaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCatat > 1:1691425‑M1/34‑49 (MQ=255) taaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCatat > 2:519681‑M1/34‑49 (MQ=255) taaaaccgtggccaatattacttgaccactacaGTATCCGTGAGCATATc > 2:1047672‑M1/34‑50 (MQ=255) ggATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacac > 1:26747‑M1/1‑37 (MQ=255) aTAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacacta > 2:612038‑M1/1‑35 (MQ=255) aGTGTGGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaat > 2:1372000‑M1/1‑33 (MQ=255) ccgtggccaatattacttgaccactacaGTATCCGTGAGCATATCGCGAt > 1:2036221‑M1/29‑50 (MQ=255) tttggcGTACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaattt < 2:810838‑M1/48‑20 (MQ=255) tgtgGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaattt < 1:1226085‑M1/50‑20 (MQ=255) gtggccaatattacttgaccactacaGTATCCGTGAGCATATCGCGATTg > 1:2041003‑M1/27‑50 (MQ=255) tgGCGTACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaatttgg > 2:1513266‑M1/1‑29 (MQ=255) gccaatattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGt < 1:1669921‑M1/26‑1 (MQ=255) gccaatattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTa > 1:485007‑M1/24‑50 (MQ=255) gccaatattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTa > 1:15477‑M1/24‑50 (MQ=255) gccaatattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTa > 2:692888‑M1/24‑50 (MQ=255) tACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaatttggccacc > 1:1483167‑M1/1‑24 (MQ=255) tACCCTCCGTTGATAGCAGGGTATgtagtggcacactaaatttggccacc < 1:439489‑M1/50‑27 (MQ=255) atattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGa < 2:1999592‑M1/31‑1 (MQ=255) atattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGa < 2:1521185‑M1/31‑1 (MQ=255) tattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGAt < 2:1562384‑M1/32‑1 (MQ=255) tattacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGAt < 2:1701334‑M1/32‑1 (MQ=255) cccTCCGTTGATAGCAGGGTATgtagtggcacactaaatttggccacct < 2:1489122‑M1/49‑28 (MQ=255) ccTCCGTTGATAGCAGGGTATgtagtggcacactaaatttggccacctga > 2:1452865‑M1/1‑21 (MQ=255) ttacttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGATgg > 2:193390‑M1/17‑50 (MQ=255) acttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGt > 1:310168‑M1/15‑49 (MQ=255) cttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGttt > 1:2043331‑M1/14‑50 (MQ=255) cttgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGttt > 2:136007‑M1/14‑50 (MQ=255) cGTTGATAGCAGGGTATgtagtggcacactaaatttggccacctgatgaa < 1:893683‑M1/50‑34 (MQ=255) cGTTGATAGCAGGGTATgtagtggcacactaaatttggccacctgatga < 2:834686‑M1/49‑33 (MQ=255) cGTTGATAGCAGGGTATgtagtggcacactaaatttggccacctgatg < 1:1545854‑M1/48‑32 (MQ=255) gTTGATAGCAGGGTATgtagtggcacactaaatttggccacctgatga > 2:1592817‑M1/1‑16 (MQ=255) gTTGATAGCAGGGTATgtagtggcacactaaatttggccacctgatga > 2:1540330‑M1/1‑16 (MQ=255) ttGATAGCAGGGTATgtagtggcacactaaatttggccacctgatgaaag < 1:1424512‑M1/50‑36 (MQ=255) tgaccactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCg < 2:1571847‑M1/39‑1 (MQ=255) tGATAGCAGGGTATgtagtggcacactaaatttggccacctgatgaaagg > 1:908174‑M1/1‑14 (MQ=255) gATAGCAGGGTATgtagtggcacactaaatttggccacctgatgaaaggt > 2:1336379‑M1/1‑13 (MQ=255) gATAGCAGGGTATgtagtggcacactaaatttggccacctgatgaaaggt > 1:1432537‑M1/1‑13 (MQ=255) tAGCAGGGTATgtagtggcacactaaatttggccacctgatgaaaggtga < 1:874586‑M1/50‑40 (MQ=255) cactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAg < 2:2046655‑M1/43‑1 (MQ=255) cactacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAg > 1:1155044‑M1/8‑50 (MQ=255) actacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGt < 2:1462535‑M1/44‑1 (MQ=255) actacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGt > 1:1110793‑M1/7‑50 (MQ=255) actacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGt < 1:1095844‑M1/44‑1 (MQ=255) ctacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTg < 1:160669‑M1/45‑1 (MQ=255) ctacaGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTg < 1:1533514‑M1/45‑1 (MQ=255) cAGGGTATgtagtggcacactaaatttggccacctgatgaaaggtgatat < 2:94757‑M1/50‑43 (MQ=255) cAGGGTATgtagtggcacactaaatttggccacctgatgaaaggtgatat > 1:1303022‑M1/1‑8 (MQ=255) aGGGTATgtagtggcacactaaatttggccacctgatgaaaggtgatatt < 2:212714‑M1/50‑44 (MQ=255) aGGGTATgtagtggcacactaaatttggccacctgatgaaaggtgatatt > 2:1226504‑M1/1‑7 (MQ=255) aGGGTATgtagtggcacactaaatttggccacctgatgaaaggtgatatt > 2:1218164‑M1/1‑7 (MQ=255) caGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAgtgct < 2:891630‑M1/47‑3 (MQ=255) caGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTGGcc > 2:418795‑M1/3‑50 (MQ=255) ggTATgtagtggcacactaaatttggccacctgatgaaaggtgatattct > 2:358781‑M1/1‑5 (MQ=255) ggTATgtagtggcacactaaatttggccacctgatgaaaggtgatattct > 1:800707‑M1/1‑5 (MQ=255) aGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTGGCCa < 1:1530372‑M1/49‑1 (MQ=255) gTATgtagtggcacactaaatttggccacctgatgaaaggtgatattct > 2:381828‑M1/1‑4 (MQ=255) | CCGGTGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATCCGTGAGCATATCGCGATTGGTAACGATGGTTTCGGGAGTGGCCA > NC_017635/254230‑254327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |