| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 679483 = | 4 (0.100) | 63 (1.590) | 39/96 | 0.1 | 67.0% | intergenic (‑370/‑72) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | 3923170 = | 58 (1.460) | intergenic (‑77/+25) | hokA/ECW_RS27255 | type I toxin‑antitoxin system toxin HokA/IS3‑like element IS150 family transposase | |||||
GAAGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/679532‑679483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG > NC_017635/3923170‑3923218 GAAGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGT > 2:442638/1‑50GAAGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGT > 1:338519/1‑50 AAGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTG > 1:1091290/1‑50 AGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGT < 2:1046046/50‑1 GGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTA > 1:1470886/1‑50 GGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTAC > 1:519615/1‑50 ACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACC > 1:1572036/1‑50 CCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCC < 1:520499/50‑1 CCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCC < 2:1854351/50‑1 CCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCC < 1:1816496/50‑1 CATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCC > 1:1219876/1‑49 CAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAA < 2:680526/50‑1 CAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAA > 2:1587980/1‑49 CAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAA > 2:1788464/1‑49 ATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGT > 2:1764561/1‑50 ATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGT > 1:427823/1‑50 TTGTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTT > 2:356543/1‑50 GTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTG > 1:1786260/1‑49 GTTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTG > 2:1030623/1‑49 TTCAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGG < 1:1841418/49‑1 CAGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGAC < 2:1769633/49‑1 AGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAG > 1:1479183/1‑50 AGGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAG > 2:1585483/1‑50 GGTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGT > 2:1234186/1‑50 GTTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGT > 2:1805943/1‑49 TTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:1301575/50‑1 TTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTT > 2:51090/1‑49 TTTGGGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTT > 2:190951/1‑49 GGTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:1610277/50‑1 GTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 2:961567/1‑50 GTAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:556046/1‑50 TAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG < 2:1823601/50‑1 TAGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 2:1275049/1‑49 AGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:1229887/1‑48 AGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:920440/1‑48 AGGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 2:1869546/1‑48 GGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 1:329748/50‑1 GGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:412105/1‑50 GGTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:1258189/1‑50 GTAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG < 2:2032196/50‑1 TAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC < 1:1344073/50‑1 TAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:114371/1‑49 TAGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 2:2079730/1‑49 AGCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:1990841/1‑50 GCCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:760170/1‑49 CCCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 2:1447224/1‑50 CCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:575410/50‑1 CCCAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:934642/50‑1 CAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:708378/1‑50 CAGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:633840/1‑50 AGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 2:1752968/1‑50 AGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:1469882/1‑50 AGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:4286/1‑50 AGGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:1638243/1‑50 GGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 2:614403/1‑50 GGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 2:485452/1‑50 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 2:1454989/1‑50 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:1433768/1‑50 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:189372/1‑50 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:490132/1‑50 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:646963/1‑50 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:1822659/1‑50 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:84455/1‑50 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 2:1253244/50‑1 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 2:912025/50‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG < 1:1140952/50‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:1414097/49‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 2:70116/49‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 2:912147/49‑1 GAAGGGACTACCATCCAAATTGTTCAGGTTTGGGTAGGTAGCCCCAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/679532‑679483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG > NC_017635/3923170‑3923218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |