| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 679483 = | 4 (0.100) | 63 (1.590) | 39/96 | 0.1 | 67.0% | intergenic (‑370/‑72) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | 3923170 = | 58 (1.460) | intergenic (‑77/+25) | hokA/ECW_RS27255 | type I toxin‑antitoxin system toxin HokA/IS3‑like element IS150 family transposase | |||||
Only 100 of 123 total aligned reads displayed.
TTTACTCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTC > NC_017635/679434‑679532 | cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaca < 1:1140952‑M1/1‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacac > 1:1822659‑M1/49‑50 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacac < 2:912025‑M1/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtaca < 2:912147‑M1/1‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtaca < 2:70116‑M1/1‑1 (MQ=255) tACTCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAAc < 2:391282/49‑1 (MQ=255) tACTCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAAc < 2:1006064/49‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacAcc > 1:1433768‑M1/48‑50 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacAcc > 1:189372‑M1/48‑50 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacAcc > 1:646963‑M1/48‑50 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacAcc > 2:1454989‑M1/48‑50 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacAccc > 2:614403‑M1/47‑50 (MQ=255) aCTCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAAcc < 1:2028442/49‑1 (MQ=255) ctctGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAAccc < 1:668811/49‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCt > 1:4286‑M1/46‑50 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCt > 1:1638243‑M1/46‑50 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCt > 1:1469882‑M1/46‑50 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTg > 1:633840‑M1/45‑50 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTg > 1:708378‑M1/45‑50 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTggg < 1:934642‑M1/8‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTggg < 1:575410‑M1/8‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTgggg > 2:1447224‑M1/42‑50 (MQ=255) gAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtac > 2:1764061‑M1/1‑47 (MQ=255) aGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtact > 1:960769‑M1/1‑46 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGc > 1:760170‑M1/40‑49 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta < 1:1344073‑M1/12‑1 (MQ=255) gTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgc < 1:215261‑M1/50‑7 (MQ=255) tCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgca > 2:506456‑M1/1‑43 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctac < 2:2032196‑M1/13‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta > 2:2079730‑M1/38‑49 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta > 1:114371‑M1/38‑49 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacc < 1:329748‑M1/14‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacc > 1:412105‑M1/37‑50 (MQ=255) cTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcac > 1:476242‑M1/1‑42 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctaccta < 2:1823601‑M1/16‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacctac > 1:556046‑M1/34‑50 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctaccta > 2:1275049‑M1/34‑49 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacct > 1:1229887‑M1/34‑48 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacct > 1:920440‑M1/34‑48 (MQ=255) gAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacc < 1:1364745‑M1/48‑10 (MQ=255) gAAAGATGAAGCCCAAGGACGATATTTCTATCAACCCTGtactgcaccc < 2:394352‑M1/49‑11 (MQ=255) tgtttaactgtccaactttttggggtcagtacACCCTGGGGCtacctacc < 1:1610277‑M1/18‑1 (MQ=255) aaGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccatt > 2:1075689‑M1/1‑37 (MQ=255) aGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattt < 2:1808871‑M1/50‑15 (MQ=255) aGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattt > 1:791887‑M1/1‑36 (MQ=255) taactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa < 1:1301575‑M1/22‑1 (MQ=255) aTGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattttg > 2:867330‑M1/1‑34 (MQ=255) aactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa > 2:51090‑M1/28‑49 (MQ=255) aactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa > 2:190951‑M1/28‑49 (MQ=255) actgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAAcc > 2:1234186‑M1/27‑50 (MQ=255) actgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAAc > 2:1805943‑M1/27‑49 (MQ=255) ctgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCt > 2:1585483‑M1/26‑50 (MQ=255) ctgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCt > 1:1479183‑M1/26‑50 (MQ=255) aGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattttgttg > 2:577693‑M1/1‑30 (MQ=255) gtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTg < 2:1769633‑M1/26‑1 (MQ=255) ccccAGGACGATATTTCTATCAACCCTGtactgcacccattttgttggac < 1:1448647‑M1/50‑23 (MQ=255) ccccAGGACGATATTTCTAGCAACCCTGtactgcacccattttgttggac < 2:275740‑M1/50‑23 (MQ=255) cccAGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacg < 1:1378523‑M1/50‑24 (MQ=255) ccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGaa < 1:1841418‑M1/28‑1 (MQ=255) caactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAAc > 2:1030623‑M1/21‑49 (MQ=255) caactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAAc > 1:1786260‑M1/21‑49 (MQ=255) cAGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacgat < 1:1083442‑M1/50‑26 (MQ=255) actttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAAt > 1:427823‑M1/19‑50 (MQ=255) actttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAAt > 2:1764561‑M1/19‑50 (MQ=255) aGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacgat > 1:1256104‑M1/1‑24 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatga < 2:2021360‑M1/50‑28 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatga < 1:1368131‑M1/50‑28 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatg > 2:32810‑M1/1‑23 (MQ=255) ttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTg < 2:680526‑M1/35‑1 (MQ=255) tttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTg > 2:1587980‑M1/15‑49 (MQ=255) atatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatg > 2:696985‑M1/1‑18 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgga < 1:1974436‑M1/50‑34 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgga < 2:531000‑M1/50‑34 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgg > 2:937317‑M1/1‑17 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgg > 2:175962‑M1/1‑17 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATgg < 2:1854351‑M1/40‑1 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATgg < 1:520499‑M1/40‑1 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATg > 1:1219876‑M1/11‑49 (MQ=255) atTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 2:2019702‑M1/1‑16 (MQ=255) atTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 1:1771747‑M1/1‑16 (MQ=255) tttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaat < 2:446364‑M1/50‑36 (MQ=255) ggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGt > 1:1572036‑M1/10‑50 (MQ=255) ttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 2:50391‑M1/1‑14 (MQ=255) ttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 1:1554848‑M1/1‑14 (MQ=255) tCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaata < 2:270951‑M1/49‑37 (MQ=255) cTATCAACCCTGtactgcacccattttgttggacgatgaaatggaatag < 1:1680594‑M1/49‑38 (MQ=255) tATCAACCCTGtactgcacccattttgttggacgatgaaatggaatagcc > 2:262140‑M1/1‑11 (MQ=255) gtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTcc > 1:519615‑M1/5‑50 (MQ=255) aTCAACCCTGtactgcacccattttgttggacgatgaaatggaatagccc > 1:800426‑M1/1‑10 (MQ=255) aTCAACCCTGtactgcacccattttgttggacgatgaaatggaatagccc > 1:123737‑M1/1‑10 (MQ=255) tacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTccc > 1:1470886‑M1/4‑50 (MQ=255) tCAACCCTGtactgcacccattttgttggacgatgaaatggaatagc < 1:516672‑M1/47‑39 (MQ=255) tCAACCCTGtactgcacccattttgttggacgatgaaatggaatagc < 1:421402‑M1/47‑39 (MQ=255) cAACCCTGtactgcacccattttgttggacgatgaaatggaatagcccc > 1:1676993‑M1/1‑8 (MQ=255) acACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCt < 2:1046046‑M1/48‑1 (MQ=255) cACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCtt > 1:1091290‑M1/2‑50 (MQ=255) aaCCCTGtactgcacccattttgttggacgatgaaatggaatagcccct < 1:763736‑M1/49‑43 (MQ=255) aCCCTGtactgcacccattttgttggacgatgaaatggaatagcccctaa > 1:105498‑M1/1‑6 (MQ=255) ACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTc > 2:442638‑M1/1‑50 (MQ=255) ACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTc > 1:338519‑M1/1‑50 (MQ=255) | TTTACTCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTC > NC_017635/679434‑679532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |