| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 679483 = | 4 (0.100) | 63 (1.590) | 39/96 | 0.1 | 67.0% | intergenic (‑370/‑72) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | 3923170 = | 58 (1.460) | intergenic (‑77/+25) | hokA/ECW_RS27255 | type I toxin‑antitoxin system toxin HokA/IS3‑like element IS150 family transposase | |||||
Only 100 of 129 total aligned reads displayed.
GAGTAAGAGGCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA > NC_017635/3923121‑3923219 | gAGTAAGAGGCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTg < 2:1791229/50‑1 (MQ=255)aagggactaccatccaaattgttcaggtttgggtaggtagccccagggtg > 1:1091290‑M2/50‑50 (MQ=255) agggactaccatccaaattgttcaggtttgggtaggtagccccagggtgt < 2:1046046‑M2/2‑1 (MQ=255) aGTAAGAGGCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGt < 2:637655/50‑1 (MQ=255) gggactaccatccaaattgttcaggtttgggtaggtagccccagggtGTa > 1:1470886‑M2/48‑50 (MQ=255) ggactaccatccaaattgttcaggtttgggtaggtagccccagggtGTAc > 1:519615‑M2/47‑50 (MQ=255) agagGCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTg < 1:1688354/50‑1 (MQ=255) ggCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGAcc > 2:1543205/1‑50 (MQ=255) ccatccaaattgttcaggtttgggtaggtagccccagggtGTACTGAccc < 2:1854351‑M2/10‑1 (MQ=255) ccatccaaattgttcaggtttgggtaggtagccccagggtGTACTGAccc < 1:1816496‑M2/10‑1 (MQ=255) cTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGAccc > 2:1114252/1‑49 (MQ=255) aaCCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCa > 2:1736415/1‑49 (MQ=255) aCCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCaaa < 2:658857/50‑1 (MQ=255) aCCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCaa < 2:767000/49‑1 (MQ=255) aCCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCa < 1:1215296/48‑1 (MQ=255) caaattgttcaggtttgggtaggtagccccagggtGTACTGACCCCaaaa < 2:680526‑M2/15‑1 (MQ=255) caaattgttcaggtttgggtaggtagccccagggtGTACTGACCCCaaa > 2:1587980‑M2/36‑49 (MQ=255) caaattgttcaggtttgggtaggtagccccagggtGTACTGACCCCaaa > 2:1788464‑M2/36‑49 (MQ=255) cTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCaaa > 2:2013093/1‑48 (MQ=255) cTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCaaa > 1:856985/1‑48 (MQ=255) ttATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAg > 2:202530/1‑50 (MQ=255) tATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGt > 1:18525/1‑50 (MQ=255) attgttcaggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGt > 2:1764561‑M2/33‑50 (MQ=255) ttgttcaggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGtt > 2:356543‑M2/32‑50 (MQ=255) tGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTg > 2:2007935/1‑50 (MQ=255) tGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTg > 2:407989/1‑50 (MQ=255) ttcaggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTgg < 1:1841418‑M2/21‑1 (MQ=255) tgtTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGAc < 2:776530/50‑1 (MQ=255) gtTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGa > 2:1270975/1‑48 (MQ=255) gtTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGa > 1:1388406/1‑48 (MQ=255) caggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGAc < 2:1769633‑M2/23‑1 (MQ=255) ttCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACa < 2:1172241/49‑1 (MQ=255) ttCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACa < 2:1441538/49‑1 (MQ=255) ttCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAg < 1:1045880/50‑1 (MQ=255) ttCAGGCATAGGGTAGCCTCACTTTGTACAGACCCCAAAAAGTTGGACa < 1:369552/49‑1 (MQ=255) aggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAg > 2:1585483‑M2/26‑50 (MQ=255) aggtttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAg > 1:1479183‑M2/26‑50 (MQ=255) gtttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGt > 2:1805943‑M2/24‑49 (MQ=255) tttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGtt > 2:190951‑M2/23‑49 (MQ=255) tttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGtt > 2:51090‑M2/23‑49 (MQ=255) tttgggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTa < 1:1301575‑M2/28‑1 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt > 2:314968/1‑49 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt > 2:323036/1‑49 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt < 1:314658/49‑1 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt > 1:1290147/1‑49 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt > 2:1391845/1‑49 (MQ=255) aGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGtt < 1:1092602/49‑1 (MQ=255) ggCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTaa < 1:889266/50‑1 (MQ=255) ggCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTaa < 2:2017029/50‑1 (MQ=255) cATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTaaa > 2:1292081/1‑49 (MQ=255) cATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTaaa > 2:203875/1‑49 (MQ=255) ggtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAaca < 1:1610277‑M2/32‑1 (MQ=255) aTAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca > 1:926787/1‑50 (MQ=255) aTAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca < 2:897634/50‑1 (MQ=255) aTAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca > 1:258776/1‑50 (MQ=255) aTAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca > 1:260606/1‑50 (MQ=255) aTAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAac > 2:1961479/1‑49 (MQ=255) tAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 1:1560511/1‑50 (MQ=255) gtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 2:961567‑M2/18‑50 (MQ=255) gtaggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 1:556046‑M2/18‑50 (MQ=255) taggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 2:1275049‑M2/17‑49 (MQ=255) taggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACg < 2:1823601‑M2/34‑1 (MQ=255) aggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 1:1229887‑M2/16‑48 (MQ=255) aggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 1:920440‑M2/16‑48 (MQ=255) aggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAacac > 2:1869546‑M2/16‑48 (MQ=255) ggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg > 1:412105‑M2/15‑50 (MQ=255) ggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg < 1:329748‑M2/36‑1 (MQ=255) ggtagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg > 1:1258189‑M2/15‑50 (MQ=255) ggTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg < 2:2052241/50‑1 (MQ=255) gTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAgg > 1:746077/1‑50 (MQ=255) tagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAgg > 1:114371‑M2/13‑49 (MQ=255) tagccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAgg > 2:2079730‑M2/13‑49 (MQ=255) agccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCa > 1:1990841‑M2/12‑50 (MQ=255) aGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCa > 1:1191439/1‑50 (MQ=255) ccccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCata > 2:1447224‑M2/10‑50 (MQ=255) ccTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCata > 1:778175/1‑50 (MQ=255) cccagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCatat < 1:934642‑M2/42‑1 (MQ=255) cTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCata > 1:543866/1‑49 (MQ=255) cagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAg > 1:708378‑M2/7‑50 (MQ=255) cagggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAg > 1:633840‑M2/7‑50 (MQ=255) agggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg > 2:1752968‑M2/6‑50 (MQ=255) agggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg > 1:1469882‑M2/6‑50 (MQ=255) agggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg > 1:1638243‑M2/6‑50 (MQ=255) agggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg > 1:4286‑M2/6‑50 (MQ=255) gggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt > 2:614403‑M2/5‑50 (MQ=255) gggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt > 2:485452‑M2/5‑50 (MQ=255) cTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt < 1:1403098/50‑1 (MQ=255) cTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt < 2:19238/50‑1 (MQ=255) ggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTc > 1:490132‑M2/4‑50 (MQ=255) ggtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTc > 1:646963‑M2/4‑50 (MQ=255) ttGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt > 2:1491883/1‑50 (MQ=255) gtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt > 1:1822659‑M2/3‑50 (MQ=255) gtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt > 1:84455‑M2/3‑50 (MQ=255) gtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt < 2:1253244‑M2/48‑1 (MQ=255) gtGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt < 2:912025‑M2/48‑1 (MQ=255) tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt < 1:1414097‑M2/48‑1 (MQ=255) tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCt < 2:912147‑M2/48‑1 (MQ=255) gTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGa > 1:55398/1‑50 (MQ=255) gTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGa > 2:539115/1‑50 (MQ=255) gTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGa > 1:11233/1‑50 (MQ=255) | GAGTAAGAGGCTAACCTTATGGTGTTCAGGCATAGGGTAGCCTCACTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA > NC_017635/3923121‑3923219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |