| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 679488 | 3 (0.070) | 53 (1.370) | 42/94 | 0.0 | 65.1% | intergenic (‑375/‑67) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | = 3924609 | 54 (1.390) | intergenic (‑45/+256) | ECW_RS27255/glyS | IS3‑like element IS150 family transposase/glycine‑‑tRNA ligase subunit beta | |||||
GAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/679442‑679488‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < NC_017635/3924609‑3924562 GAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTAC > 2:1764061/1‑50 AGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACT > 1:960769/1‑50 AGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACT > 1:1478977/1‑50 GTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGC < 1:215261/50‑1 GTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTG > 2:1029830/1‑49 TCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCA > 2:506456/1‑50 CTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCAC > 1:476242/1‑50 GAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACC < 1:1364745/48‑1 GAAAGATGAAGCCCAAGGACGATATTTCTATCAACCCTGTACTGCACCC < 2:394352/49‑1 AAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATT > 2:1075689/1‑50 AGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTT < 2:1808871/50‑1 AGATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTT > 1:791887/1‑50 ATGAAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTG > 2:867330/1‑50 AAGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTG > 2:582320/1‑50 AGCCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTG > 2:577693/1‑49 CCCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGAC < 1:1448647/50‑1 CCCCAGGACGATATTTCTAGCAACCCTGTACTGCACCCATTTTGTTGGAC < 2:275740/50‑1 CCCAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACG < 1:1378523/50‑1 CAGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGAT < 1:1083442/50‑1 AGGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGAT > 1:1256104/1‑49 GGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGA < 1:1368131/50‑1 GGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGA < 2:2021360/50‑1 GGACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATG > 2:32810/1‑49 GACGATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGA > 2:748804/1‑49 ATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < 1:408139/50‑1 ATATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 2:696985/1‑49 TATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 2:531000/50‑1 TATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 1:1974436/50‑1 TATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 2:937317/1‑49 TATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 2:175962/1‑49 ATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 2:2019702/1‑50 ATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:1625204/1‑50 ATTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:1771747/1‑50 TTTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 2:446364/50‑1 TTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:1554848/1‑48 TTCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 2:50391/1‑48 TCTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:270951/49‑1 CTATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:1680594/49‑1 TATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC > 2:262140/1‑50 ATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:800426/1‑50 ATCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:123737/1‑50 TCACCCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC < 1:1215472/48‑1 TCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:421402/47‑1 TCAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:516672/47‑1 CAACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:1676993/1‑49 AACCCTGTACTGCTCCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:55987/50‑1 AACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:689611/50‑1 AACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:763736/49‑1 ACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 2:24687/50‑1 ACCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:105498/1‑50 CCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:435865/1‑49 CCTGTACTGCTCCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:724914/50‑1 CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:1499226/1‑50 TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < 2:134631/50‑1 GAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/679442‑679488‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < NC_017635/3924609‑3924562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |