| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 679488 | 3 (0.070) | 53 (1.370) | 42/94 | 0.0 | 65.1% | intergenic (‑375/‑67) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | = 3924609 | 54 (1.390) | intergenic (‑45/+256) | ECW_RS27255/glyS | IS3‑like element IS150 family transposase/glycine‑‑tRNA ligase subunit beta | |||||
Only 100 of 107 total aligned reads displayed.
TCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTCTTCG > NC_017635/679439‑679536 | ctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTg > 1:633840‑M1/45‑50 (MQ=255)ctatatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTg > 1:708378‑M1/45‑50 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTggg < 1:575410‑M1/8‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTggg < 1:934642‑M1/8‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacACCCTgggg > 2:1447224‑M1/42‑50 (MQ=255) gAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtac > 2:1764061‑M1/1‑47 (MQ=255) aGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtact > 1:1478977‑M1/1‑46 (MQ=255) aGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtact > 1:960769‑M1/1‑46 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGct > 1:1990841‑M1/40‑50 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGc > 1:760170‑M1/40‑49 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta < 1:1344073‑M1/12‑1 (MQ=255) gTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgc < 1:215261‑M1/50‑7 (MQ=255) gTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactg > 2:1029830‑M1/1‑44 (MQ=255) tCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgca > 2:506456‑M1/1‑43 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctac < 2:2032196‑M1/13‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta > 2:2079730‑M1/38‑49 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGcta > 1:114371‑M1/38‑49 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacc > 1:1258189‑M1/37‑50 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacc < 1:329748‑M1/14‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacc > 1:412105‑M1/37‑50 (MQ=255) cTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcac > 1:476242‑M1/1‑42 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacACCCTGGGGctaccta < 2:1823601‑M1/16‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctaccta > 2:1275049‑M1/34‑49 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacct > 1:1229887‑M1/34‑48 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacct > 2:1869546‑M1/34‑48 (MQ=255) gtgtttaactgtccaactttttggggtcagtacACCCTGGGGctacct > 1:920440‑M1/34‑48 (MQ=255) gAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacc < 1:1364745‑M1/48‑10 (MQ=255) tgtttaactgtccaactttttggggtcagtacACCCTGGGGCtacctacc < 1:1610277‑M1/18‑1 (MQ=255) aaGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccatt > 2:1075689‑M1/1‑37 (MQ=255) aGATGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattt > 1:791887‑M1/1‑36 (MQ=255) taactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa < 1:1301575‑M1/22‑1 (MQ=255) aTGAAGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattttg > 2:867330‑M1/1‑34 (MQ=255) aactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa > 2:190951‑M1/28‑49 (MQ=255) aactgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCaaa > 2:51090‑M1/28‑49 (MQ=255) actgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAAcc > 2:1234186‑M1/27‑50 (MQ=255) actgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAAc > 2:1805943‑M1/27‑49 (MQ=255) ctgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCt > 2:1585483‑M1/26‑50 (MQ=255) ctgtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCt > 1:1479183‑M1/26‑50 (MQ=255) aaGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattttgttg > 2:582320‑M1/1‑31 (MQ=255) aGCCCCAGGACGATATTTCTATCAACCCTGtactgcacccattttgttg > 2:577693‑M1/1‑30 (MQ=255) gtccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTg < 2:1769633‑M1/26‑1 (MQ=255) ccccAGGACGATATTTCTAGCAACCCTGtactgcacccattttgttggac < 2:275740‑M1/50‑23 (MQ=255) cccAGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacg < 1:1378523‑M1/50‑24 (MQ=255) ccaactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGaa < 1:1841418‑M1/28‑1 (MQ=255) caactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAAc > 1:1786260‑M1/21‑49 (MQ=255) cAGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacgat < 1:1083442‑M1/50‑26 (MQ=255) aactttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACaa > 2:356543‑M1/20‑50 (MQ=255) actttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAAt > 2:1764561‑M1/19‑50 (MQ=255) actttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAAt > 1:427823‑M1/19‑50 (MQ=255) aGGACGATATTTCTATCAACCCTGtactgcacccattttgttggacgat > 1:1256104‑M1/1‑24 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatga < 1:1368131‑M1/50‑28 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatga < 2:2021360‑M1/50‑28 (MQ=255) ggACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatg > 2:32810‑M1/1‑23 (MQ=255) gACGATATTTCTATCAACCCTGtactgcacccattttgttggacgatga > 2:748804‑M1/1‑22 (MQ=255) ttttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTg < 2:680526‑M1/35‑1 (MQ=255) tttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTg > 2:1587980‑M1/15‑49 (MQ=255) tttggggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTg > 2:1788464‑M1/15‑49 (MQ=255) atatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgg < 1:408139‑M1/50‑33 (MQ=255) atatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatg > 2:696985‑M1/1‑18 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgga < 2:531000‑M1/50‑34 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgg > 2:937317‑M1/1‑17 (MQ=255) tatTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatgg > 2:175962‑M1/1‑17 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATgg < 2:1854351‑M1/40‑1 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATgg < 1:520499‑M1/40‑1 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATgg < 1:1816496‑M1/40‑1 (MQ=255) gggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATg > 1:1219876‑M1/11‑49 (MQ=255) atTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 1:1771747‑M1/1‑16 (MQ=255) atTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 1:1625204‑M1/1‑16 (MQ=255) atTTCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 2:2019702‑M1/1‑16 (MQ=255) tttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaat < 2:446364‑M1/50‑36 (MQ=255) ggtcagtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGt > 1:1572036‑M1/10‑50 (MQ=255) ttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 2:50391‑M1/1‑14 (MQ=255) ttCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaa > 1:1554848‑M1/1‑14 (MQ=255) tCTATCAACCCTGtactgcacccattttgttggacgatgaaatggaata < 2:270951‑M1/49‑37 (MQ=255) cTATCAACCCTGtactgcacccattttgttggacgatgaaatggaatag < 1:1680594‑M1/49‑38 (MQ=255) tATCAACCCTGtactgcacccattttgttggacgatgaaatggaatagcc > 2:262140‑M1/1‑11 (MQ=255) gtacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTcc > 1:519615‑M1/5‑50 (MQ=255) aTCAACCCTGtactgcacccattttgttggacgatgaaatggaatagccc > 1:123737‑M1/1‑10 (MQ=255) aTCAACCCTGtactgcacccattttgttggacgatgaaatggaatagccc > 1:800426‑M1/1‑10 (MQ=255) tacACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTccc > 1:1470886‑M1/4‑50 (MQ=255) tCACCCCTGtactgcacccattttgttggacgatgaaatggaatagcc < 1:1215472‑M1/48‑40 (MQ=255) tCAACCCTGtactgcacccattttgttggacgatgaaatggaatagc < 1:516672‑M1/47‑39 (MQ=255) tCAACCCTGtactgcacccattttgttggacgatgaaatggaatagc < 1:421402‑M1/47‑39 (MQ=255) cAACCCTGtactgcacccattttgttggacgatgaaatggaatagcccc > 1:1676993‑M1/1‑8 (MQ=255) acACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCt < 2:1046046‑M1/48‑1 (MQ=255) cACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCtt > 1:1091290‑M1/2‑50 (MQ=255) aaCCCTGtactgctcccattttgttggacgatgaaatggaatagccccta < 1:55987‑M1/50‑44 (MQ=255) aaCCCTGtactgcacccattttgttggacgatgaaatggaatagccccta < 1:689611‑M1/50‑44 (MQ=255) aaCCCTGtactgcacccattttgttggacgatgaaatggaatagcccct < 1:763736‑M1/49‑43 (MQ=255) aCCCTGtactgcacccattttgttggacgatgaaatggaatagcccctaa < 2:24687‑M1/50‑45 (MQ=255) aCCCTGtactgcacccattttgttggacgatgaaatggaatagcccctaa > 1:105498‑M1/1‑6 (MQ=255) ACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTc > 2:442638‑M1/1‑50 (MQ=255) ACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTc > 1:338519‑M1/1‑50 (MQ=255) cccTGtactgcacccattttgttggacgatgaaatggaatagcccctaa > 1:435865‑M1/1‑5 (MQ=255) ccTGtactgctcccattttgttggacgatgaaatggaatagcccctaata < 1:724914‑M1/50‑47 (MQ=255) ccTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCcttctt < 1:596053/50‑1 (MQ=255) cTGtactgcacccattttgttggacgatgaaatggaatagcccctaatat > 1:1499226‑M1/1‑3 (MQ=255) tGtactgcacccattttgttggacgatgaaatggaatagcccctaatatg < 2:134631‑M1/50‑49 (MQ=255) ggggCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTCTTCg > 1:517364/1‑49 (MQ=255) ggggCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTCTTCg > 2:565134/1‑49 (MQ=255) | TCTGAGGTCTGGAAAGATGAAGCCCCAGGACGATATTTCTATCAACCCTGGGGCTACCTACCCAAACCTGAACAATTTGGATGGTAGTCCCTTCTTCG > NC_017635/679439‑679536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |