| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 679488 | 3 (0.070) | 53 (1.370) | 42/94 | 0.0 | 65.1% | intergenic (‑375/‑67) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| ? | NC_017635 | = 3924609 | 54 (1.390) | intergenic (‑45/+256) | ECW_RS27255/glyS | IS3‑like element IS150 family transposase/glycine‑‑tRNA ligase subunit beta | |||||
Only 100 of 116 total aligned reads displayed.
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGT > NC_017635/3924560‑3924657 | gACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 2:1825113/1‑50 (MQ=255)gACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 2:1064449/1‑50 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 1:338116/1‑49 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 1:1582855/1‑49 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 2:1355645/1‑49 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 1:822051/1‑49 (MQ=255) cATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTa > 1:333925/1‑48 (MQ=255) cATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAca < 2:134631‑M2/50‑3 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTacac > 1:1191448/1‑50 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTacac < 1:1291592/50‑1 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcag > 1:1499226‑M2/1‑47 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACt > 2:1740331/1‑50 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACt > 1:1683161/1‑50 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACt > 1:674767/1‑50 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACt > 2:1589082/1‑50 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTAcagg < 1:724914‑M2/50‑5 (MQ=255) ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggt < 2:24687‑M2/50‑7 (MQ=255) ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggt > 1:105498‑M2/1‑44 (MQ=255) ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcaggg > 1:435865‑M2/1‑44 (MQ=255) ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACttt < 1:13989/50‑1 (MQ=255) ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACtt < 1:1267856/49‑1 (MQ=255) tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggtt < 1:689611‑M2/50‑8 (MQ=255) tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTAcagggtt < 1:55987‑M2/50‑8 (MQ=255) ggggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttg > 1:1676993‑M2/1‑41 (MQ=255) gggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgat > 1:800426‑M2/1‑40 (MQ=255) gggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGAtt < 2:322575/50‑1 (MQ=255) ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgata > 2:262140‑M2/1‑39 (MQ=255) ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcaggggtga < 1:1215472‑M2/48‑10 (MQ=255) ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGAtt > 1:1604818/1‑49 (MQ=255) ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGAtt > 2:1998011/1‑49 (MQ=255) gCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttga < 1:421402‑M2/47‑10 (MQ=255) cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatag < 1:1680594‑M2/49‑13 (MQ=255) ttCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaat > 1:1625204‑M2/1‑34 (MQ=255) ttCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaat > 2:2019702‑M2/1‑34 (MQ=255) ttCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaa > 2:50391‑M2/1‑34 (MQ=255) ttCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaa > 1:1554848‑M2/1‑34 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaata < 1:1974436‑M2/50‑18 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaata < 2:531000‑M2/50‑18 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGt > 1:1071750/1‑49 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGt > 2:557760/1‑49 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatat < 1:408139‑M2/50‑19 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaata > 2:175962‑M2/1‑32 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTc < 2:1771047/49‑1 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTc < 1:1247011/49‑1 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTc < 1:1854055/49‑1 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatat > 2:696985‑M2/1‑31 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCa < 2:502919/49‑1 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAg > 1:1836740/1‑50 (MQ=255) tttCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGt < 2:700458/50‑1 (MQ=255) ttCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTg > 2:27249/1‑50 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcc < 2:2021360‑M2/50‑24 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcc < 1:1368131‑M2/50‑24 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtc > 2:748804‑M2/1‑27 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTgg > 1:212863/1‑50 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTgg > 1:113816/1‑50 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTg < 1:1747295/49‑1 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTg < 2:1632433/49‑1 (MQ=255) cATCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcc > 2:32810‑M2/1‑26 (MQ=255) aTCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcctg < 1:1083442‑M2/50‑26 (MQ=255) aTCGTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcct > 1:1256104‑M2/1‑25 (MQ=255) aTCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTgggg > 2:1178201/1‑50 (MQ=255) aTCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTgggg > 2:1418631/1‑50 (MQ=255) aTCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTgggg < 2:1484522/50‑1 (MQ=255) gTCCAACAAAATGGGTGCAGTAcagggttgctagaaatatcgtcctgggg < 2:275740‑M2/50‑29 (MQ=255) gTCCAACAAAATGGGTGCAGTAcagggttgatagaaatatcgtcctgggg < 1:1448647‑M2/50‑29 (MQ=255) gTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCtt > 2:1789564/1‑50 (MQ=255) gTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCtt < 2:1322621/50‑1 (MQ=255) tCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCttt > 2:1910844/1‑50 (MQ=255) ccAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCtttt > 2:1259315/1‑50 (MQ=255) ccAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCtttt > 1:418441/1‑50 (MQ=255) caacaaAATGGGTGCAGTAcagggttgatagaaatatcgtcctggggctt > 2:582320‑M2/1‑19 (MQ=255) caacaaAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCtttt < 2:161157/49‑1 (MQ=255) caacaaAATGGGTGCAGTACACTTTGATTTATAGACAGGTGGGGCTTTtc > 2:575019/1‑50 (MQ=255) aacaaAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTtct > 2:1423242/1‑50 (MQ=255) acaaAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTtctc > 2:871814/1‑50 (MQ=255) caaAATGGGTGCAGTAcagggttgatagaaatatcgtcctggggcttcat > 2:867330‑M2/1‑16 (MQ=255) caaAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTctct < 2:354856/50‑1 (MQ=255) aaaTGGGTGCAGTAcagggttgatagaaatatcgtcctggggcttcatct > 1:791887‑M2/1‑14 (MQ=255) aaaTGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt < 1:64906/50‑1 (MQ=255) aaaTGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt > 2:1601408/1‑50 (MQ=255) aaTGGGTGCAGTAcagggttgatagaaatatcgtcctggggcttcatctt > 2:1075689‑M2/1‑13 (MQ=255) aTGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct < 1:682568/50‑1 (MQ=255) gggTGCAGTAcagggttgatagaaatatcgtccttgggcttcatctttc < 2:394352‑M2/49‑40 (MQ=255) ggTGCAGTAcagggttgatagaaatatcgtcctggggcttcatctttc < 1:1364745‑M2/48‑40 (MQ=255) ggTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc > 1:1171259/1‑50 (MQ=255) ggTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc > 2:1747634/1‑50 (MQ=255) gTGCAGTAcagggttgatagaaatatcgtcctggggcttcatctttccag > 1:476242‑M2/1‑8 (MQ=255) gTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt > 1:927212/1‑50 (MQ=255) gTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt > 1:362638/1‑50 (MQ=255) tGCAGTAcagggttgatagaaatatcgtcctggggcttcatctttccaga > 2:506456‑M2/1‑7 (MQ=255) tGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCtt > 2:1605749/1‑50 (MQ=255) gCAGTAcagggttgatagaaatatcgtcctggggcttcatctttccagac < 1:215261‑M2/50‑45 (MQ=255) gCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt > 1:906519/1‑50 (MQ=255) cAGTAcagggttgatagaaatatcgtcctggggcttcatctttccagac > 2:1029830‑M2/1‑5 (MQ=255) cAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt < 2:1183602/49‑1 (MQ=255) cAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc > 2:105995/1‑50 (MQ=255) aGTAcagggttgatagaaatatcgtcctggggcttcatctttccagacct > 1:960769‑M2/1‑4 (MQ=255) aGTAcagggttgatagaaatatcgtcctggggcttcatctttccagacct > 1:1478977‑M2/1‑4 (MQ=255) gTAcagggttgatagaaatatcgtcctggggcttcatctttccagacctc > 2:1764061‑M2/1‑3 (MQ=255) tACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt < 2:1623388/50‑1 (MQ=255) | GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGT > NC_017635/3924560‑3924657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |