| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 4805124 = | 39 (0.960) | 31 (0.940) | 21/80 | 0.3 | 56.0% | intergenic (+48/‑432) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | 4805438 = | 17 (0.520) | intergenic (+362/‑118) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/4805181‑4805124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCG > NC_017635/4805438‑4805486 TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTT < 1:1182762/50‑1TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTT > 2:1693693/1‑50TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTT < 2:545236/50‑1TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTT < 1:223924/50‑1 TTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGG > 2:924075/1‑50 TTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTG < 2:996651/49‑1 TTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGG < 1:684359/49‑1 TATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGC < 2:276003/49‑1 ATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 2:397802/1‑50 ATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 2:1239471/1‑50 ATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCC > 1:491059/1‑50 CTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCA < 1:1391078/49‑1 GAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAA < 2:799290/48‑1 AGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGT > 2:978465/1‑50 AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTT > 1:1836526/1‑49 CGTAACTTATTTATGATATGTACAGTTTGGCCCCAAATGTTTCATCTTTT > 2:1720966/1‑50 CGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTT < 2:34531/50‑1 CGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTT < 2:1115801/50‑1 GTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 2:1356648/50‑1 GTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG > 2:892223/1‑50 GTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 2:1310000/50‑1 GTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG > 1:822708/1‑50 TAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGG < 2:391163/50‑1 ACTTATTTATGATATGGACAGTTTGGCCCCATATGTTTCATCTTTTGGGG < 2:1646573/50‑1 ACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGG < 2:1321160/50‑1 CTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGG < 2:2046650/50‑1 ATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA > 1:1094091/1‑49 ATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAA > 2:743373/1‑49 ATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGA < 1:1268006/48‑1 ATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGA < 1:1582471/48‑1 ATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGA < 1:853841/48‑1 TATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAAC < 2:1443841/49‑1 ATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTG > 1:1984974/1‑50 ATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTG > 1:1115597/1‑50 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGT < 1:599029/50‑1 ATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGC < 2:1402708/50‑1 TGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGT < 1:1961338/50‑1 ACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTT > 1:805070/1‑50 ACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTT < 2:493005/50‑1 CAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG < 1:548087/50‑1 CAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG < 2:801970/50‑1 AGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGG < 1:985272/50‑1 AGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGG < 2:715692/50‑1 TGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGT < 1:867202/50‑1 TGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGT > 2:1790036/1‑50 TGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGT < 2:860877/50‑1 CCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAA < 2:2007600/50‑1 CCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA > 2:1827113/1‑49 CCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAA < 2:1480313/50‑1 CCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAC < 2:53302/50‑1 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACT < 1:629622/50‑1 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACT > 1:1026176/1‑50 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTC < 1:1528338/50‑1 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCG > 1:724435/1‑50 TTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/4805181‑4805124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCG > NC_017635/4805438‑4805486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |