| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 4805124 = | 39 (0.960) | 31 (0.940) | 21/80 | 0.3 | 56.0% | intergenic (+48/‑432) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | 4805438 = | 17 (0.520) | intergenic (+362/‑118) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
Only 100 of 162 total aligned reads displayed.
GATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAA > NC_017635/4805075‑4805172 | cgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:724435‑M1/50‑50 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:1528338‑M1/2‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATT < 1:100632‑M1/50‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 1:1053217‑M1/49‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 2:1774662‑M1/49‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 2:403498‑M1/49‑1 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:1026176‑M1/48‑50 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg < 1:629622‑M1/3‑1 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGG > 1:296967‑M1/1‑50 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGG > 1:148602‑M1/1‑50 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 2:53302‑M1/4‑1 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 2:1480313‑M1/5‑1 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 2:2007600‑M1/6‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGG > 1:687242‑M1/1‑50 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGG < 2:1839216‑M1/49‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGG < 1:1995704‑M1/49‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg > 2:1827113‑M1/44‑49 (MQ=255) aCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC > 2:756524‑M1/1‑50 (MQ=255) aCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC < 1:1551105‑M1/50‑1 (MQ=255) aCTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGG < 1:326838‑M1/49‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCA > 2:1750492‑M1/1‑50 (MQ=255) ttATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCC > 2:796854‑M1/1‑49 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:867202‑M1/9‑1 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 2:860877‑M1/9‑1 (MQ=255) aTTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 2:634253/1‑50 (MQ=255) aTTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:186411/49‑1 (MQ=255) tGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 2:714526‑M1/1‑46 (MQ=255) tGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:211281‑M1/1‑46 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt < 1:985272‑M1/13‑1 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg < 2:801970‑M1/14‑1 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:2058270‑M1/1‑44 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:1792381‑M1/1‑44 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 2:1845494/50‑1 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:805070‑M1/36‑50 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgac > 1:1362039‑M1/1‑43 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 2:903707/1‑50 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 2:1564919/50‑1 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 1:70134/1‑50 (MQ=255) aataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 2:1175587/1‑49 (MQ=255) ataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:1356747‑M1/1‑41 (MQ=255) ataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:964491‑M1/1‑41 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 2:932477‑M1/50‑13 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:100798‑M1/50‑13 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:844299/50‑1 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata < 1:1786572/49‑1 (MQ=255) aGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 1:97405‑M1/50‑14 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:599029‑M1/23‑1 (MQ=255) ttAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 2:1396326‑M1/1‑35 (MQ=255) ttAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 2:151515/50‑1 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:1984974‑M1/27‑50 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:1115597‑M1/27‑50 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 2:1443841‑M1/25‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaa < 2:1026135‑M1/50‑19 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa < 2:1329786/49‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 2:155424/1‑49 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 2:1192825/1‑49 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 2:743373‑M1/22‑49 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag > 2:397816‑M1/1‑30 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:853841‑M1/28‑1 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:1582471‑M1/28‑1 (MQ=255) cccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAg < 2:2046650‑M1/31‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:521921‑M1/1‑27 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc > 1:259641‑M1/1‑26 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc > 2:1071774‑M1/1‑26 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcgtagaggaaagcatcg > 1:1120794‑M1/1‑25 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 2:1356648‑M1/35‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 2:892223‑M1/16‑50 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 2:1310000‑M1/35‑1 (MQ=255) ataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgc > 2:1888171‑M1/1‑24 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 2:34531‑M1/36‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTACATATCATAAATAAGTTACg > 2:1720966‑M1/15‑50 (MQ=255) aaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg > 1:387288‑M1/1‑22 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 2:328308/1‑49 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgca > 1:1287113‑M1/1‑21 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgc < 1:1867666‑M1/49‑29 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 2:989364/49‑1 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 2:1206238/1‑50 (MQ=255) ataCAAGACAATTTGGGCCAttttgactcatagaggaaagcatcgcgca > 1:1433932‑M1/1‑20 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcac < 1:1836724‑M1/50‑31 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgca > 2:586390‑M1/1‑20 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcac > 2:534153‑M1/1‑19 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcac > 2:64761‑M1/1‑19 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcaca > 1:1455979‑M1/1‑18 (MQ=255) cAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaa > 2:1390325‑M1/1‑17 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 2:1274347/1‑50 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:1372348‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:1583397‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:1615894‑M1/1‑16 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaact > 1:455875‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt > 1:1158401/1‑50 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactt < 2:603921‑M1/50‑37 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:1361301/50‑1 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:582895/50‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaacttt > 1:1036274‑M1/1‑13 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 2:946183/50‑1 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaacttttt < 2:1041537‑M1/50‑40 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaacttttt < 1:1099822‑M1/50‑40 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactttttc < 2:494731‑M1/50‑41 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactttttc < 1:808775‑M1/50‑41 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaacttttt > 2:625597‑M1/1‑10 (MQ=255) | GATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAA > NC_017635/4805075‑4805172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |