| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 4805124 = | 39 (0.960) | 31 (0.940) | 21/80 | 0.3 | 56.0% | intergenic (+48/‑432) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | 4805438 = | 17 (0.520) | intergenic (+362/‑118) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
AAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGT > NC_017635/4805391‑4805487 | gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaa < 2:799290‑M2/1‑1 (MQ=255)aaaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg > 2:1190611/1‑50 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGt > 2:978465‑M2/47‑50 (MQ=255) aaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:728282/50‑1 (MQ=255) aaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt < 1:419976/50‑1 (MQ=255) aaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt > 1:1836526‑M2/44‑49 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 2:109601/50‑1 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt < 2:1530869/49‑1 (MQ=255) cgtaacttatttatgatatgtacagtttggccccaaATGTTTCATCtttt > 2:1720966‑M2/37‑50 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtttt < 2:1115801‑M2/14‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtttt < 2:34531‑M2/14‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg < 2:1310000‑M2/15‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 2:892223‑M2/36‑50 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg < 2:1356648‑M2/15‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 1:822708‑M2/36‑50 (MQ=255) taacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg < 2:391163‑M2/16‑1 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:1618989/50‑1 (MQ=255) acttatttatgatatggacagtttggccccatATGTTTCATCTTTTgggg < 2:1646573‑M2/18‑1 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg < 2:1321160‑M2/18‑1 (MQ=255) cttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggggg < 2:2046650‑M2/19‑1 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa > 1:1094091‑M2/29‑49 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa > 2:743373‑M2/29‑49 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa < 1:1268006‑M2/20‑1 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa < 1:853841‑M2/20‑1 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa < 1:1582471‑M2/20‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:1944050/48‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:985564/48‑1 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc < 2:1443841‑M2/24‑1 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtg > 1:1115597‑M2/25‑50 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtg > 1:1984974‑M2/25‑50 (MQ=255) tgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:599029‑M2/27‑1 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGc < 2:1402708‑M2/29‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:936972/48‑1 (MQ=255) tggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:1961338‑M2/32‑1 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt > 1:1870430/1‑50 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt > 2:1676804/1‑50 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt < 2:1903460/50‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:1417837/50‑1 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt > 1:805070‑M2/16‑50 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 2:493005‑M2/35‑1 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg < 1:548087‑M2/36‑1 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg < 2:801970‑M2/36‑1 (MQ=255) cAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 2:1704412/1‑50 (MQ=255) agtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg < 2:715692‑M2/37‑1 (MQ=255) agtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg < 1:985272‑M2/37‑1 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTgg > 1:1387239/1‑50 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc < 2:593103/50‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 2:1463887/1‑50 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 2:860877‑M2/41‑1 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 2:1790036‑M2/10‑50 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:867202‑M2/41‑1 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa < 2:2007600‑M2/44‑1 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 2:1827113‑M2/7‑49 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa < 2:1480313‑M2/45‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc < 2:53302‑M2/46‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 1:629622‑M2/47‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:1026176‑M2/4‑50 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc < 1:1528338‑M2/48‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:724435‑M2/2‑50 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:1150566/1‑50 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt < 1:1549844/50‑1 (MQ=255) | AAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGT > NC_017635/4805391‑4805487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |