| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 4805132 | 39 (0.960) | 61 (1.860) | 38/80 | 0.0 | 71.5% | intergenic (+56/‑424) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | = 4805428 | 17 (0.520) | intergenic (+352/‑128) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/4805076‑4805132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATTT < NC_017635/4805428‑4805380 ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATT < 1:100632/50‑1ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATT < 2:322501/50‑1ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 2:1774662/49‑1ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 2:1185841/49‑1ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 2:403498/49‑1ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAAT < 1:1053217/49‑1 TTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGG > 1:296967/1‑50 TTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGG > 1:148602/1‑50 TAACTTATTGATAATAAAGTTAAAAAACAAATAAATAGAAGACAATTGG < 2:555803/49‑1 TAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGG > 2:65138/1‑50 AACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGG > 1:687242/1‑50 AACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGG < 1:1995704/49‑1 AACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGG < 2:1839216/49‑1 ACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC > 2:756524/1‑50 ACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC < 1:1551105/50‑1 ACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGG < 1:326838/49‑1 CTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC > 1:1370752/1‑49 CTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGC > 1:712329/1‑49 TTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCA > 2:1750492/1‑50 TTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCC > 2:796854/1‑49 ATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 2:1481963/49‑1 TTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTT < 2:1524135/50‑1 TGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 2:714526/1‑50 TGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:211281/1‑50 ATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGA > 1:2058270/1‑50 ATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGA > 1:1792381/1‑50 TAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGAC > 1:1362039/1‑50 AATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACT > 2:929915/1‑50 AATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACT > 2:589641/1‑50 ATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACT > 2:1356747/1‑49 ATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACT > 2:964491/1‑49 ATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACT > 1:587318/1‑49 AAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATA < 1:100798/50‑1 AAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATA < 2:932477/50‑1 AGTTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAG < 1:97405/50‑1 TTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAG > 2:1396326/1‑50 TTAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAG < 2:1348211/50‑1 TAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAG > 1:268396/1‑49 AAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAA < 2:1026135/50‑1 AAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGA > 1:419859/1‑49 AAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGA > 2:877012/1‑49 AAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGA > 1:132206/1‑49 AAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAG > 2:397816/1‑50 AAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAG < 2:1367996/50‑1 CAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCAT > 1:521921/1‑50 CAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCAT > 1:327301/1‑50 AAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATC > 2:1071774/1‑50 AAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATC > 1:259641/1‑50 AATAAATACAAGACAATTGGGGCCATTTTGACTCGTAGAGGAAAGCATCG > 1:1120794/1‑50 ATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGC > 2:1888171/1‑50 TAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG < 1:1668820/50‑1 TAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG > 1:649109/1‑50 AAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG > 1:387288/1‑49 AATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCA > 1:1287113/1‑50 AATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGC < 1:1867666/49‑1 ATACAAGACAATTTGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCA > 1:1433932/1‑49 ATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCAC < 1:1836724/50‑1 ATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCA > 2:586390/1‑49 ATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCA > 1:149865/1‑49 TACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACA < 1:1042884/50‑1 TACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCAC > 2:534153/1‑49 TACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCAC > 2:64761/1‑49 TACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCAC > 1:947047/1‑49 ACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACA > 2:939722/1‑49 ACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACA > 1:1455979/1‑49 CAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAA > 2:1390325/1‑50 CAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAA > 2:513074/1‑50 CAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAA > 2:1829051/1‑50 AAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAAC > 2:1372348/1‑50 AAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAAC > 2:1615894/1‑50 AAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAAC > 2:1583397/1‑50 AAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAAC > 2:631815/1‑50 AGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACT > 1:455875/1‑50 GACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTT < 2:1258314/50‑1 GACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTT < 2:603921/50‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTT > 1:1036274/1‑50 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTT < 1:1099822/50‑1 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTT < 2:1041537/50‑1 ATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTC < 2:494731/50‑1 ATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTC < 1:808775/50‑1 ATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTT > 2:625597/1‑49 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAG > 2:269874/1‑50 GGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGT > 2:963717/1‑50 GGGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAG < 1:1511858/49‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTT < 2:322405/50‑1 GGCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTT < 1:781659/50‑1 GCCATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTA < 2:1459898/50‑1 CATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCCGTTTATT < 2:793028/50‑1 CATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATT < 1:1314739/50‑1 CATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATT > 2:182403/1‑50 CATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATT > 2:816750/1‑50 CATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATT < 1:989734/50‑1 ATTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATTT > 2:1465157/1‑50 ATTTAACTTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/4805076‑4805132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGCACAAACTTTTTCAGTTTATTT < NC_017635/4805428‑4805380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |