| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 4805132 | 39 (0.960) | 61 (1.860) | 38/80 | 0.0 | 71.5% | intergenic (+56/‑424) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | = 4805428 | 17 (0.520) | intergenic (+352/‑128) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
CAAATAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAG > NC_017635/4805379‑4805477 | caaATAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCaaaa < 1:567014/50‑1 (MQ=255)caaATAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1685013/1‑50 (MQ=255)caaATAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1306733/1‑50 (MQ=255) aaaTAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAt > 2:1465157‑M2/1‑49 (MQ=255) aaTAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtg > 2:182403‑M2/1‑48 (MQ=255) aaTAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtg < 1:989734‑M2/50‑3 (MQ=255) aaTAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtg < 1:1314739‑M2/50‑3 (MQ=255) aaTAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtg > 2:816750‑M2/1‑48 (MQ=255) aaTAAACGGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtg < 2:793028‑M2/50‑3 (MQ=255) tAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggc < 2:1459898‑M2/50‑5 (MQ=255) aaaCTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggcc < 1:781659‑M2/50‑6 (MQ=255) aaCTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 2:322405‑M2/50‑7 (MQ=255) aCTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggcccc > 2:963717‑M2/1‑43 (MQ=255) cTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca > 2:269874‑M2/1‑42 (MQ=255) cTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggcccc < 1:1511858‑M2/49‑8 (MQ=255) gAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat < 2:494731‑M2/50‑11 (MQ=255) gAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat < 1:808775‑M2/50‑11 (MQ=255) aaaaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaatt < 2:1041537‑M2/50‑12 (MQ=255) aaaaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaatt < 1:1099822‑M2/50‑12 (MQ=255) aaaaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat > 2:625597‑M2/1‑39 (MQ=255) aaaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg > 2:1190611/1‑50 (MQ=255) aaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgt > 1:1036274‑M2/1‑37 (MQ=255) aaaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:728282/50‑1 (MQ=255) aaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc < 2:1258314‑M2/50‑15 (MQ=255) aaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc < 2:603921‑M2/50‑15 (MQ=255) aaGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt < 1:419976/50‑1 (MQ=255) aGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtct > 1:455875‑M2/1‑35 (MQ=255) gTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtctt > 2:1615894‑M2/1‑34 (MQ=255) gTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtctt > 2:1583397‑M2/1‑34 (MQ=255) gTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtctt > 2:1372348‑M2/1‑34 (MQ=255) gTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtctt > 2:631815‑M2/1‑34 (MQ=255) tttGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttg > 2:1829051‑M2/1‑33 (MQ=255) tttGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttg > 2:1390325‑M2/1‑33 (MQ=255) tttGTGCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttg > 2:513074‑M2/1‑33 (MQ=255) tgtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgta < 1:1042884‑M2/50‑20 (MQ=255) tgtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgt > 2:939722‑M2/1‑31 (MQ=255) tgtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgt > 1:1455979‑M2/1‑31 (MQ=255) gtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtat < 1:1836724‑M2/50‑21 (MQ=255) gtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgta > 2:534153‑M2/1‑30 (MQ=255) gtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgta > 1:947047‑M2/1‑30 (MQ=255) gtgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgta > 2:64761‑M2/1‑30 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatt > 1:1287113‑M2/1‑29 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtat > 2:586390‑M2/1‑29 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtat > 1:149865‑M2/1‑29 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAAtggcccaaattgtcttgtat > 1:1433932‑M2/1‑29 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 2:109601/50‑1 (MQ=255) tgCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt < 2:1530869/49‑1 (MQ=255) gcgcGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatt < 1:1867666‑M2/49‑22 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattta > 1:649109‑M2/1‑27 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattta < 1:1668820‑M2/50‑24 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattt > 1:387288‑M2/1‑27 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttat > 2:1888171‑M2/1‑26 (MQ=255) cgATGCTTTCCTCTACGAGTCAAAAtggccccaattgtcttgtatttatt > 1:1120794‑M2/1‑25 (MQ=255) gATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttattt > 2:1071774‑M2/1‑24 (MQ=255) gATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttattt > 1:259641‑M2/1‑24 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:1618989/50‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttg > 1:521921‑M2/1‑23 (MQ=255) aTGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttg > 1:327301‑M2/1‑23 (MQ=255) cTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttt < 2:1367996‑M2/50‑31 (MQ=255) cTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttt > 2:397816‑M2/1‑20 (MQ=255) ttCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt < 2:1026135‑M2/50‑33 (MQ=255) tCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt > 2:877012‑M2/1‑17 (MQ=255) tCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt > 1:419859‑M2/1‑17 (MQ=255) tCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt > 1:132206‑M2/1‑17 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:1944050/48‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:985564/48‑1 (MQ=255) ctctATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttaa < 2:1348211‑M2/50‑36 (MQ=255) ctctATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttaa > 2:1396326‑M2/1‑15 (MQ=255) ctctATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttta > 1:268396‑M2/1‑15 (MQ=255) ctATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttaact < 1:97405‑M2/50‑38 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttaactt < 1:100798‑M2/50‑39 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttaactt < 2:932477‑M2/50‑39 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:936972/48‑1 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt > 2:1676804/1‑50 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt > 1:1870430/1‑50 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgttttttaactttatt > 2:589641‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgttttttaactttatt > 2:929915‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgttttttaactttat > 2:1356747‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgttttttaactttat > 2:964491‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgttttttaactttat > 1:587318‑M2/1‑8 (MQ=255) gTCAAAAtggccccaattgtcttgtatttatttgttttttaactttatta > 1:1362039‑M2/1‑7 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt < 2:1903460/50‑1 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgttttttaactttattat > 1:1792381‑M2/1‑6 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgttttttaactttattat > 1:2058270‑M2/1‑6 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:1417837/50‑1 (MQ=255) cAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 2:1704412/1‑50 (MQ=255) aaaatggccccaattgtcttgtatttatttgttttttaactttattatca > 1:211281‑M2/1‑4 (MQ=255) aaaatggccccaattgtcttgtatttatttgttttttaactttattatca > 2:714526‑M2/1‑4 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTgg > 1:1387239/1‑50 (MQ=255) aaatggccccaattgtcttgtatttatttgttttttaactttattatcaa < 2:1524135‑M2/50‑48 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc < 2:593103/50‑1 (MQ=255) atggccccaattgtcttgtatttatttgttttttaactttattatcaat < 2:1481963‑M2/49‑49 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 2:1463887/1‑50 (MQ=255) | CAAATAAACTGAAAAAGTTTGTGCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAG > NC_017635/4805379‑4805477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |