| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 4805132 | 39 (0.960) | 61 (1.860) | 38/80 | 0.0 | 71.5% | intergenic (+56/‑424) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NC_017635 | = 4805428 | 17 (0.520) | intergenic (+352/‑128) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
Only 100 of 159 total aligned reads displayed.
TTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAA > NC_017635/4805083‑4805181 | actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 2:1790036‑M1/42‑50 (MQ=255)actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 2:860877‑M1/9‑1 (MQ=255)actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:867202‑M1/9‑1 (MQ=255) aTTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:186411/49‑1 (MQ=255) aTTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 2:1481963‑M1/49‑2 (MQ=255) ttGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCaaa < 2:1578643/49‑1 (MQ=255) tGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 2:714526‑M1/1‑46 (MQ=255) tGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:211281‑M1/1‑46 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt < 1:985272‑M1/13‑1 (MQ=255) gATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:1839094/49‑1 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:1792381‑M1/1‑44 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:2058270‑M1/1‑44 (MQ=255) ataataAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 2:1845494/50‑1 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:805070‑M1/36‑50 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt < 2:493005‑M1/15‑1 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 2:903707/1‑50 (MQ=255) taataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 1:70134/1‑50 (MQ=255) aataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:929915‑M1/1‑42 (MQ=255) aataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:589641‑M1/1‑42 (MQ=255) aataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 2:1175587/1‑49 (MQ=255) ataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:587318‑M1/1‑41 (MQ=255) ataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:1356747‑M1/1‑41 (MQ=255) ataaAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 2:964491‑M1/1‑41 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:1961338‑M1/18‑1 (MQ=255) aaaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1116032/1‑50 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:100798‑M1/50‑13 (MQ=255) aaGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:844299/50‑1 (MQ=255) aGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 1:97405‑M1/50‑14 (MQ=255) aGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 2:2026569/1‑49 (MQ=255) aGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:1555814/50‑1 (MQ=255) gTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 2:1743677/1‑50 (MQ=255) ttAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 2:1396326‑M1/1‑35 (MQ=255) ttAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 2:1846796/50‑1 (MQ=255) ttAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 2:151515/50‑1 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:1115597‑M1/27‑50 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:1984974‑M1/27‑50 (MQ=255) tAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 1:268396‑M1/1‑34 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 2:1443841‑M1/25‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaa < 2:1026135‑M1/50‑19 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:419859‑M1/1‑32 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:132206‑M1/1‑32 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa < 2:1329786/49‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 2:155424/1‑49 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 2:743373‑M1/22‑49 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 1:1094091‑M1/22‑49 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:853841‑M1/28‑1 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:1268006‑M1/28‑1 (MQ=255) ccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt < 2:1321160‑M1/32‑1 (MQ=255) ccccaaaagatgaaacatATGGGGCCAAACTGTCCATATCATAAATAAGt < 2:1646573‑M1/32‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:521921‑M1/1‑27 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:327301‑M1/1‑27 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:990962/1‑50 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 2:1356648‑M1/35‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 2:892223‑M1/16‑50 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg > 1:649109‑M1/1‑23 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:1668820‑M1/50‑28 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:1012523/1‑50 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 2:34531‑M1/36‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 2:1115801‑M1/36‑1 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 2:328308/1‑49 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgca > 1:1287113‑M1/1‑21 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 2:1206238/1‑50 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcaca < 1:1042884‑M1/50‑32 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcac > 2:64761‑M1/1‑19 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcac > 2:534153‑M1/1‑19 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcaca > 2:939722‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcaca > 1:1455979‑M1/1‑18 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 2:1274347/1‑50 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 2:1392390/1‑50 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:631815‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:1583397‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaac > 2:1372348‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt > 2:995343/1‑50 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt > 1:1836526‑M1/7‑49 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt > 1:1446729/1‑50 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt > 1:1158401/1‑50 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactt < 2:603921‑M1/50‑37 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:1361301/50‑1 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:582895/50‑1 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 2:978465‑M1/5‑50 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 2:946183/50‑1 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaacttttt < 2:1041537‑M1/50‑40 (MQ=255) tTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 2:799290‑M1/47‑1 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactttttc < 1:808775‑M1/50‑41 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactttttc < 2:494731‑M1/50‑41 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:724567/1‑48 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcgcacaaactttttcag > 2:269874‑M1/1‑8 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1391078‑M1/49‑1 (MQ=255) ggggCCAttttgactcatagaggaaagcatcgcgcacaaactttttcag < 1:1511858‑M1/49‑43 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt > 2:1239471‑M1/1‑50 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt > 1:491059‑M1/1‑50 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt > 2:397802‑M1/1‑50 (MQ=255) gCCAttttgactcatagaggaaagcatcgcgcacaaactttttcagttta < 2:1459898‑M1/50‑47 (MQ=255) GCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 2:276003‑M1/49‑1 (MQ=255) cAttttgactcatagaggaaagcatcgcgcacaaactttttccgtttatt < 2:793028‑M1/50‑49 (MQ=255) cAttttgactcatagaggaaagcatcgcgcacaaactttttcagtttatt > 2:816750‑M1/1‑2 (MQ=255) cAttttgactcatagaggaaagcatcgcgcacaaactttttcagtttatt > 2:182403‑M1/1‑2 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:223924‑M1/50‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 2:545236‑M1/50‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 2:1693693‑M1/1‑50 (MQ=255) | TTATTGATAATAAAGTTAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAA > NC_017635/4805083‑4805181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |