| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 2314099 = | 13 (0.320) | 17 (0.610) | 13/68 | 0.6 | 54.0% | coding (38/414 nt) | ECW_RS28245 | hypothetical protein |
| ? | NC_017635 | 2315940 = | 20 (0.720) | pseudogene (1/459 nt) | ECW_RS28250 | phage tail protein | |||||
AGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTC > NC_017635/2315895‑2315989 | agaagaACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTAt < 2:751001/50‑1 (MQ=255)agaagaACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTAt < 1:283615/50‑1 (MQ=255)agaagaACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTAt > 1:212750/1‑50 (MQ=255) gaacggaacgCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCga < 2:1995906/50‑1 (MQ=255) gaacggaacgCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCga < 2:1750583/50‑1 (MQ=255) cgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCgag > 1:798802‑M2/40‑49 (MQ=255) gttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCgag > 1:745072‑M2/39‑48 (MQ=255) ttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGagaag < 2:667953‑M2/13‑1 (MQ=255) tacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGagaaga > 2:1208621‑M2/37‑50 (MQ=255) cccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGAc > 2:67557‑M2/35‑49 (MQ=255) acgCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGAcc < 1:1411849/50‑1 (MQ=255) cgCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCa < 1:1421064/50‑1 (MQ=255) ccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCa < 2:1394518‑M2/17‑1 (MQ=255) ccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCa < 1:1935009‑M2/17‑1 (MQ=255) ccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCa < 2:1401892‑M2/17‑1 (MQ=255) cacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAg > 1:1060392‑M2/33‑50 (MQ=255) cacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAg > 1:633821‑M2/33‑50 (MQ=255) ccAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGc < 1:1047356/50‑1 (MQ=255) catcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGcc < 1:89740‑M2/20‑1 (MQ=255) catcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGc > 2:704051‑M2/31‑49 (MQ=255) aTAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCcac < 1:734039/50‑1 (MQ=255) gCTGGAGCACCTTCTCCAAAACAAAGGTATGCGAGAAGACCAGCCACATc < 2:269553/50‑1 (MQ=18) cTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCt < 2:277974/50‑1 (MQ=255) cTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCt < 1:1462674/50‑1 (MQ=255) ttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCtt < 1:1030646‑M2/27‑1 (MQ=255) ttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCtt > 2:1352630‑M2/24‑50 (MQ=255) ttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCtt > 1:2032255‑M2/24‑50 (MQ=255) ggAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCttt > 2:962680/1‑50 (MQ=255) ggAGCACCTTCTCCCAAACCAAGGAATGCGAGAAGACCAGCCACATCttt > 2:642542/1‑50 (MQ=255) ttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCtttt > 2:448213‑M2/22‑50 (MQ=255) gAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCtttt > 2:371237/1‑50 (MQ=255) gAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCtttt > 2:1707333/1‑50 (MQ=255) gCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTcc < 1:1659267/50‑1 (MQ=255) gCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTcc < 1:101414/50‑1 (MQ=255) ccgcttcccccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTcc < 2:1794654‑M2/31‑1 (MQ=255) ccccTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCa < 2:1826922/48‑1 (MQ=255) ccccTTCCCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCa < 2:1569146/48‑1 (MQ=17) ctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCaa < 1:128619‑M2/37‑1 (MQ=255) cccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAAt > 1:1499303‑M2/11‑49 (MQ=255) ccaacccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGa < 2:992787‑M2/41‑1 (MQ=255) ccaaaccaaGTTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGa < 2:947669‑M2/41‑1 (MQ=255) ccaaaccaaGGTATGCGAGAAGACCAGCTACATCTTTTCCACTCAAATg < 1:725154‑M2/40‑1 (MQ=255) ccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATg < 1:348967‑M2/40‑1 (MQ=255) aaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGt < 1:326756‑M2/43‑1 (MQ=255) aaccaaGTTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTc < 2:1775547‑M2/44‑1 (MQ=255) aaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTc < 2:1214304‑M2/44‑1 (MQ=255) aaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTc < 1:925239‑M2/44‑1 (MQ=255) caaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGc < 2:1745604‑M2/47‑1 (MQ=255) caaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGc < 1:538800‑M2/47‑1 (MQ=255) aaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCg > 2:1809634‑M2/3‑50 (MQ=255) ggTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGtc > 1:2051788/1‑50 (MQ=255) | AGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTC > NC_017635/2315895‑2315989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |