mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 663,602 | 0 | T | G | 61.5% | ‑4.8 / 10.7 | 13 | A284A (GCA→GCC) | ECW_RS03175 | type VI secretion system tip protein VgrG |
| * | NC_017635 | 3,127,767 | 0 | T | G | 52.6% | 10.7 / 22.2 | 20 | pseudogene (1083/1425 nt) | tssA | type VI secretion system protein TssA |
| * | NC_017635 | 4,327,004 | 0 | T | G | 51.6% | 35.1 / 47.5 | 31 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NC_017635 | 3,127,334 | 0 | C | T | 50.0% | ‑3.8 / 14.8 | 14 | pseudogene (650/1425 nt) | tssA | type VI secretion system protein TssA |
| * | NC_017635 | 4,363,963 | 0 | A | G | 46.0% | 11.9 / 121.1 | 74 | V340V (GTA→GTG) | ECW_RS21820 | phage late control D family protein |
| * | NC_017635 | 663,410 | 0 | G | T | 42.9% | 19.1 / 13.7 | 14 | I348I (ATC→ATA) | ECW_RS03175 | type VI secretion system tip protein VgrG |
| * | NC_017635 | 1,637,750 | 0 | A | G | 41.7% | 29.8 / 29.1 | 24 | Q597R (CAG→CGG) | ECW_RS08125 | RHS element core protein |
| * | NC_017635 | 1,637,757 | 0 | G | A | 41.7% | 33.2 / 29.4 | 24 | E599E (GAG→GAA) | ECW_RS08125 | RHS element core protein |
| * | NC_017635 | 123,066 | 0 | A | T | 35.9% | 52.9 / 19.0 | 39 | L15L (CTT→CTA) | aroP | aromatic amino acid transporter AroP |
| * | NC_017635 | 76,754 | 0 | C | T | 33.3% | 44.0 / 13.2 | 27 | L134L (CTG→CTA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NC_017635 | 4,327,011 | 0 | G | T | 30.8% | 87.4 / 14.6 | 39 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NC_017635 | 3,111,916 | 0 | C | G | 30.0% | 50.3 / 26.0 | 30 | A449A (GCC→GCG) | vgrG | type VI secretion system tip protein VgrG |
| * | NC_017635 | 4,454,267 | 0 | A | T | 30.0% | 61.8 / 14.0 | 30 | intergenic (+48/+193) | rpoC/thiH | DNA‑directed RNA polymerase subunit beta'/2‑iminoacetate synthase ThiH |
| * | NC_017635 | 4,733,046 | 0 | A | G | 29.3% | 103.1 / 10.8 | 58 | E189G (GAA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NC_017635 | 2,321,642 | 0 | G | T | 27.8% | 86.5 / 20.2 | 37 | A18A (GCC→GCA) | ECW_RS11635 | glycoside hydrolase family 104 protein |
| * | NC_017635 | 3,419,148 | 0 | C | T | 26.2% | 95.7 / 15.1 | 42 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_017635 | 3,668,239 | 0 | G | A | 22.9% | 100.2 / 31.2 | 48 | G318G (GGC→GGT) | tuf | elongation factor Tu |
| * | NC_017635 | 1,364,786 | 0 | A | T | 21.1% | 83.0 / 12.2 | 38 | V8E (GTA→GAA) | chaA | sodium‑potassium/proton antiporter ChaA |