mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 11.4% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 162,498 | G→T | 5.7% | G77C (GGT→TGT) | ydgH → | DUF1471 family protein YdgH |
| RA | NZ_CP022686 | 263,831 | A→C | 10.2% | intergenic (+38/+19) | fadK → / ← ppsA | medium‑chain fatty‑acid‑‑CoA ligase/phosphoenolpyruvate synthase |
| RA | NZ_CP022686 | 277,453 | T→G | 8.6% | H202P (CAC→CCC) | pheS ← | phenylalanine‑‑tRNA ligase subunit alpha |
| RA | NZ_CP022686 | 298,027 | A→C | 12.3% | F60C (TTT→TGT) | chbC ← | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | NZ_CP022686 | 329,133 | C→T | 6.8% | intergenic (‑81/‑80) | ydjA ← / → sppA | NAD(P)H nitroreductase/signal peptide peptidase SppA |
| RA | NZ_CP022686 | 349,106 | A→C | 11.7% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 360,227 | T→G | 21.1% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 15.6% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 418,374 | T→G | 8.2% | F48V (TTT→GTT) | znuB → | zinc ABC transporter permease subunit ZnuB |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 487,559 | T→G | 11.8% | T526T (ACA→ACC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | NZ_CP022686 | 531,408 | A→C | 14.0% | K44N (AAA→AAC) | fliF → | flagellar basal‑body MS‑ring/collar protein FliF |
| RA | NZ_CP022686 | 556,942 | G→T | 12.3% | intergenic (+126/‑722) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 596,637 | T→G | 13.3% | G54G (GGT→GGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 24.5% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 636,713 | A→C | 11.2% | R452R (CGT→CGG) | clbM ← | precolibactin export MATE transporter ClbM |
| RA | NZ_CP022686 | 651,833 | A→C | 11.7% | P243P (CCT→CCG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 651,848 | A→C | 12.3% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 764,997 | T→G | 15.8% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 766,763 | A→T | 13.3% | Y288* (TAT→TAA) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,428 | T→G | 16.5% | intergenic (‑17/+210) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,435 | C→A | 28.7% | intergenic (‑24/+203) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,441 | C→A | 23.6% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 23.0% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 19.9% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 859,999 | T→G | 8.0% | A620A (GCT→GCG) | yehM → | DUF5682 family protein |
| RA | NZ_CP022686 | 881,742 | A→C | 19.4% | intergenic (+257/+130) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 881,760 | T→G | 24.7% | intergenic (+275/+112) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,054 | C→G | 7.9% | intergenic (+123/‑134) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,080 | G→T | 12.0% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 13.8% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 1,000,431 | T→G | 30.8% | D945A (GAC→GCC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,005,085 | C→A | 14.2% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,011,426 | G→C | 12.8% | M1M (ATG→ATC) † | glpA → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
| RA | NZ_CP022686 | 1,064,076 | A→C | 6.2% | T161P (ACG→CCG) | yfbR → | 5'‑deoxynucleotidase |
| RA | NZ_CP022686 | 1,065,974 | G→C | 9.3% | A38G (GCA→GGA) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,126,401 | A→C | 8.1% | A532A (GCT→GCG) | CIW80_RS05650 ← | phase‑variable autotransporter adhesin UpaE |
| RA | NZ_CP022686 | 1,137,229 | A→C | 7.1% | R243R (CGT→CGG) | emrK ← | multidrug efflux MFS transporter periplasmic adaptor subunit EmrK |
| RA | NZ_CP022686 | 1,174,272 | A→C | 14.6% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,174,416 | A→T | 7.4% | intergenic (+26/‑21) | CIW80_RS05860 → / → CIW80_RS05865 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,197,189 | T→G | 5.1% | V90G (GTG→GGG) | murQ → | N‑acetylmuramic acid 6‑phosphate etherase |
| RA | NZ_CP022686 | 1,272,651 | T→G | 5.6% | N91T (AAC→ACC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,360,709 | T→G | 11.5% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 9.0% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,756 | C→A | 9.3% | intergenic (‑91/+233) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,783 | G→T | 7.8% | intergenic (‑118/+206) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,556 | T→G | 13.8% | P99P (CCA→CCC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,370,559 | T→G | 11.8% | K98N (AAA→AAC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,396,420 | T→G | 7.4% | intergenic (+26/‑211) | gabT → / → gabP | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase/GABA permease |
| RA | NZ_CP022686 | 1,479,607 | A→C | 13.2% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,479,619 | T→A | 10.3% | intergenic (‑28/+165) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,305 | A→T | 9.4% | N248Y (AAT→TAT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,339 | C→A | 19.7% | P259Q (CCA→CAA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,351 | A→C | 12.0% | N263T (AAC→ACC) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 11.1% | A264A (GCT→GCA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,547,000 | G→C | 8.2% | intergenic (+22/‑12) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,110 | G→C | 24.1% | intergenic (+22/‑12) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 13.0% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,543 | A→C | 11.2% | S182R (AGC→CGC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,632,480 | T→G | 7.3% | V159G (GTC→GGC) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,632,501 | T→G | 7.1% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 29.1% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,644,964 | T→G | 6.8% | G83G (GGT→GGG) | xanQ → | xanthine/proton symporter XanQ |
| RA | NZ_CP022686 | 1,674,244 | T→G | 15.4% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 12.3% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 15.8% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,025 | C→A | 22.1% | intergenic (‑635/‑20) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,145 | A→C | 9.8% | T42P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,167 | A→C | 11.0% | N49T (AAC→ACC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,828,113 | A→C | 9.6% | P84P (CCT→CCG) | gspK ← | type II secretion system minor pseudopilin GspK |
| RA | NZ_CP022686 | 1,832,023 | T→G | 8.0% | N355T (AAC→ACC) | gspE ← | type II secretion system ATPase GspE |
| RA | NZ_CP022686 | 1,925,332 | A→C | 8.7% | N151T (AAC→ACC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 2,016,175 | T→G | 8.9% | noncoding (99/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,016,225 | T→G | 8.0% | noncoding (49/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,037,521 | A→C | 11.6% | T508P (ACC→CCC) | lpoA → | penicillin‑binding protein activator LpoA |
| RA | NZ_CP022686 | 2,061,804 | A→C | 10.9% | K391N (AAA→AAC) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,110,457 | T→G | 8.6% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 6.9% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,472 | T→G | 7.4% | K7N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,130,829 | A→C | 8.2% | V237G (GTT→GGT) | mreC ← | rod shape‑determining protein MreC |
| RA | NZ_CP022686 | 2,148,115 | T→G | 10.4% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,122 | T→G | 7.9% | S128R (AGT→AGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,139 | C→G | 10.5% | A134G (GCG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,150,098 | T→G | 8.0% | intergenic (+15/‑314) | prmA → / → dusB | 50S ribosomal protein L11 methyltransferase/tRNA dihydrouridine synthase DusB |
| RA | NZ_CP022686 | 2,185,075 | A→C | 6.1% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,192,062 | A→C | 6.8% | R69R (CGT→CGG) | rplD ← | 50S ribosomal protein L4 |
| RA | NZ_CP022686 | 2,194,054 | G→T | 7.9% | Q444K (CAA→AAA) | gspA ← | type II secretion system protein GspA |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,272,790 | C→G | 9.1% | intergenic (+32/‑65) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,393,013 | T→G | 7.3% | intergenic (+151/‑2) | slp → / → dctR | outer membrane lipoprotein Slp/LuxR C‑terminal‑related transcriptional regulator |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,448,912 | G→T | 7.5% | A180S (GCG→TCG) | yhjV → | aromatic amino acid transport family protein |
| RA | NZ_CP022686 | 2,460,514 | G→C | 6.4% | A22G (GCC→GGC) | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,576 | C→A | 11.6% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,581 | A→C | 16.3% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,516,873 | A→C | 10.3% | K761N (AAA→AAC) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,546,394 | A→C | 13.8% | V95G (GTT→GGT) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,546,400 | A→C | 9.8% | L93R (CTG→CGG) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,546,408 | C→A | 11.4% | M90I (ATG→ATT) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,559,398 | T→G | 7.2% | N461T (AAC→ACC) | ligB ← | NAD‑dependent DNA ligase LigB |
| RA | NZ_CP022686 | 2,572,705 | A→C | 10.6% | G191G (GGT→GGG) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 13.0% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| RA | NZ_CP022686 | 2,574,451 | T→G | 14.0% | T223P (ACT→CCT) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,717,385 | T→G | 9.8% | F96V (TTT→GTT) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,736,578 | C→A | 8.3% | T180T (ACC→ACA) | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,736,585 | T→A | 7.2% | Y183N (TAC→AAC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,736,586 | A→C | 13.1% | Y183S (TAC→TCC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,754,985 | C→G | 7.5% | M1M (ATG→ATC) † | cyaY ← | iron donor protein CyaY |
| RA | NZ_CP022686 | 2,758,109 | A→C | 6.8% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,113 | A→C | 7.2% | A35A (GCA→GCC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,128 | A→C | 10.8% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,137 | G→C | 7.7% | E43D (GAG→GAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,144 | A→C | 10.0% | T46P (ACG→CCG) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,153 | A→C | 8.0% | T49P (ACG→CCG) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,168 | A→C | 7.2% | N54H (AAC→CAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,801,817 | T→G | 6.1% | Y32S (TAC→TCC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,801,864 | T→G | 7.4% | L16F (TTA→TTC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,834,886 | A→C | 9.3% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,868,740 | T→G | 23.6% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,745 | C→G | 7.0% | A20A (GCG→GCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 8.0% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,904,852 | T→G | 9.5% | T239P (ACG→CCG) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,920,428 | A→C | 10.6% | K68N (AAA→AAC) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,981,612 | A→C | 8.0% | T567P (ACC→CCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,981,625 | A→C | 6.8% | D571A (GAC→GCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,989,627 | T→G | 9.4% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,020,229 | T→G | 15.9% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,080,461 | T→G | 7.0% | R158R (CGT→CGG) | CIW80_RS15320 → | Ldh family oxidoreductase |
| RA | NZ_CP022686 | 3,098,847 | A→C | 8.0% | intergenic (+17/+22) | CIW80_RS15415 → / ← actP | LrgB family protein/cation/acetate symporter ActP |
| RA | NZ_CP022686 | 3,136,940 | T→G | 9.5% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,184,651 | A→C | 11.1% | intergenic (‑98/+18) | cutA ← / ← dcuA | divalent cation tolerance protein CutA/anaerobic C4‑dicarboxylate transporter DcuA |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,252,190 | T→G | 12.6% | K221N (AAA→AAC) | CIW80_RS16225 ← | enoyl‑CoA hydratase/isomerase family protein |
| RA | NZ_CP022686 | 3,265,121 | G→T | 6.7% | Q65K (CAA→AAA) | ytfJ ← | YtfJ family protein |
| RA | NZ_CP022686 | 3,297,333 | T→G | 10.0% | F828V (TTT→GTT) | mgtA → | magnesium‑translocating P‑type ATPase |
| RA | NZ_CP022686 | 3,348,334 | T→G | 6.0% | intergenic (‑150/‑50) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,342 | A→T | 11.2% | intergenic (‑158/‑42) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,357 | T→G | 7.3% | intergenic (‑173/‑27) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,357,446 | C→A | 6.6% | T10K (ACG→AAG) | CIW80_RS16765 → | DUF932 domain‑containing protein |
| RA | NZ_CP022686 | 3,387,644 | A→C | 12.3% | L222R (CTG→CGG) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,390,625 | C→A | 12.0% | D140Y (GAT→TAT) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,411,341 | T→G | 5.5% | V114G (GTT→GGT) | fimH → | type 1 fimbria D‑mannose specific adhesin FimH |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,785 | T→G | 5.3% | T503P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,461,229 | T→G | 18.7% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,231 | C→G | 9.5% | noncoding (82/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,363 | A→C | 14.6% | noncoding (65/87 nt) | CIW80_RS17345 ← | tRNA‑Leu |
| JC | NZ_CP022686 | 3,509,100 | Δ12 bp | 45.1% | coding (1567‑1578/1917 nt) | dnaK → | molecular chaperone DnaK |
| RA | NZ_CP022686 | 3,583,665 | A→C | 6.4% | Q342H (CAA→CAC) | ilvI → | acetolactate synthase 3 large subunit |
| RA | NZ_CP022686 | 3,625,683 | T→G | 10.8% | A150A (GCT→GCG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,625,704 | T→G | 7.8% | R157R (CGT→CGG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,634,614 | A→C | 7.3% | K267N (AAA→AAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,652,079 | T→G | 9.3% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,652,090 | T→G | 8.1% | intergenic (‑99/+13) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,655,540 | A→C | 7.6% | F765V (TTT→GTT) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,660,810 | C→A | 11.2% | R245L (CGC→CTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,665,907 | A→C | 5.1% | Q462H (CAA→CAC) | hrpB → | ATP‑dependent helicase HrpB |
| RA | NZ_CP022686 | 3,665,943 | A→C | 8.9% | K474N (AAA→AAC) | hrpB → | ATP‑dependent helicase HrpB |
| RA | NZ_CP022686 | 3,703,648 | A→C | 9.4% | T120P (ACG→CCG) | fabZ → | 3‑hydroxyacyl‑ACP dehydratase FabZ |
| RA | NZ_CP022686 | 3,731,466 | T→C | 100% | intergenic (+20/‑35) | rrf → / → CIW80_RS18620 | 5S ribosomal RNA/tRNA‑Asp |
| RA | NZ_CP022686 | 3,731,470 | C→T | 100% | intergenic (+24/‑31) | rrf → / → CIW80_RS18620 | 5S ribosomal RNA/tRNA‑Asp |
| RA | NZ_CP022686 | 3,731,473 | Δ1 bp | 100% | intergenic (+27/‑28) | rrf → / → CIW80_RS18620 | 5S ribosomal RNA/tRNA‑Asp |
| RA | NZ_CP022686 | 3,734,367 | T→G | 22.5% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 19.8% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 16.4% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,798,080 | T→G | 7.3% | R329R (CGT→CGG) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,826,780 | A→C | 5.0% | E638D (GAA→GAC) | CIW80_RS19160 → | type I secretion system permease/ATPase |
| RA | NZ_CP022686 | 3,852,459 | T→G | 10.0% | N178T (AAC→ACC) | phoE ← | phosphoporin PhoE |
| RA | NZ_CP022686 | 3,868,846 | T→G | 10.3% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,885,457 | A→C | 13.0% | N1404T (AAC→ACC) | fdeC → | inverse autotransporter adhesin FdeC |
| RA | NZ_CP022686 | 3,885,499 | A→C | 8.7% | intergenic (+2/+123) | fdeC → / ← CIW80_RS19455 | inverse autotransporter adhesin FdeC/helix‑turn‑helix domain‑containing protein |
| RA | NZ_CP022686 | 3,925,289 | A→C | 13.4% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,925,304 | A→C | 12.3% | Q161P (CAG→CCG) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,925,309 | G→T | 12.6% | E163* (GAA→TAA) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,369 | T→G | 12.8% | W285G (TGG→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,376 | T→G | 9.5% | V287G (GTA→GGA) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 11.2% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 11.3% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,942,556 | T→G | 6.1% | T121P (ACG→CCG) | yaiO ← | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 3,981,933 | T→G | 14.6% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,014,238 | C→G | 9.5% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,018,211 | T→G | 6.2% | intergenic (+146/‑42) | clpX → / → lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La |
| RA | NZ_CP022686 | 4,032,292 | A→C | 16.0% | E106D (GAA→GAC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,056,962 | C→A | 13.8% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,079,329 | A→C | 6.0% | S170A (TCA→GCA) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,133,839 | T→G | 11.6% | K117T (AAA→ACA) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,196,276 | T→G | 16.1% | E15D (GAA→GAC) | holA ← | DNA polymerase III subunit delta |
| RA | NZ_CP022686 | 4,249,121 | A→C | 10.2% | V35G (GTC→GGC) | kdpD ← | two‑component system sensor histidine kinase KdpD |
| RA | NZ_CP022686 | 4,368,341 | T→G | 16.0% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,485,614 | T→G | 10.6% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,547,558 | A→C | 10.4% | T144P (ACC→CCC) | torD → | molecular chaperone TorD |
| RA | NZ_CP022686 | 4,571,439 | T→G | 9.3% | H59P (CAC→CCC) | pgaC ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | NZ_CP022686 | 4,583,784 | G→C | 8.4% | R78S (AGG→AGC) | CIW80_RS22900 → | YfjI family protein |
| RA | NZ_CP022686 | 4,587,091 | T→G | 11.9% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,632,182 | T→G | 10.0% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,678,047 | A→C | 34.9% | intergenic (+45/‑76) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,712,763 | A→C | 16.4% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,764,880 | T→G | 12.6% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 17.4% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,809,441 | T→G | 11.3% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,814,990 | T→G | 10.3% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,815,886 | T→G | 10.5% | V25G (GTG→GGG) | CIW80_RS24305 → | C40 family peptidase |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,910,213 | A→C | 5.4% | F48V (TTT→GTT) | purU ← | formyltetrahydrofolate deformylase |
| RA | NZ_CP022686 | 4,947,296 | T→G | 12.8% | V29G (GTG→GGG) | rluB → | 23S rRNA pseudouridine(2605) synthase RluB |
| RA | NZ_CP022686 | 4,976,169 | A→C | 8.3% | N826T (AAC→ACC) | CIW80_RS25180 → | efflux RND transporter permease subunit |
| RA | NZ_CP022686 | 5,001,164 | A→C | 21.8% | N163T (AAC→ACC) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,042,304 | T→C | 11.0% | N645N (AAT→AAC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,558 | T→C | 6.1% | S1063S (AGT→AGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,648 | G→C | 7.3% | V1093V (GTG→GTC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→A | 13.6% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,641 | C→T | 5.3% | N1424N (AAC→AAT) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 2,031 | G→A | 100% | intergenic (‑235/‑1500) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,465 | +GGCTAGCTCA | 13.1% | intergenic (‑1669/‑66) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ15 bp | 100% | [IL2wt no signal] | [IL2wt no signal] | |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 4,019 | +CAT | 7.8% | intergenic (+12/+37) | IL2wt no signal → / ← annotated as hok_sok locus | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 188–2618 | 3086–2957 | 340–2899 | 8957 [8714] | [8827] 9052 | JNG15_RS00005–mobA | JNG15_RS00005,JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMut‑Ompa‑D5‑IL2wt‑His6 | 4746–4889 | 5478–5074 | 186–733 | 4090 [3947] | [0] NA | [putative HTH domain protein] | [putative HTH domain protein] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | = 1524130 | NA (NA) | 43 (0.010) | 30/250 | NT | 5.2% | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3633 = | 791 (0.120) | coding (25/399 nt) | IL2wt no signal | ||||||
| * | ? | NZ_CP022686 | = 1761697 | NA (NA) | 96 (0.030) | 50/250 | NT | 10.8% | intergenic (‑72/‑70) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3633 = | 791 (0.120) | coding (25/399 nt) | IL2wt no signal | ||||||
| * | ? | NZ_CP022686 | = 1761699 | NA (NA) | 22 (0.010) +24 bp |
16/202 | NT | 77.3% | intergenic (‑74/‑68) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 8 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 3393988 = | NA (NA) | 85 (0.030) +23 bp |
41/204 | NT | 92.9% | intergenic (‑51/+11) | CIW80_RS16975/CIW80_RS16980 | hypothetical protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 8 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 3899666 = | 204 (0.980) | 23 (0.130) | 18/218 | NT | 11.2% | intergenic (‑40/+290) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | 3899944 = | 186 (1.020) | intergenic (‑318/+12) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | = 3899681 | 195 (0.930) | 34 (0.190) | 22/218 | NT | 16.0% | intergenic (‑55/+275) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | = 3899927 | 186 (1.020) | intergenic (‑301/+29) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||