New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002745 2325293 =264 (1.120)3 (0.010) 3/462 12.6 1.1% coding (882/1212 nt) SA_RS11850 MFS transporter
?NC_002745 2325304 = 267 (1.130)coding (893/1212 nt) SA_RS11850 MFS transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTATATGAAAACATATGAGTAAATAACCCAAGGAATGATGGACCGAAGCCGACACCTGCATCTAGACCAACGTAAAAAGTAGATGTCGCGATACCATATTTAATCGGGGGTGAGACTTTTATCGCAATAGATTGCATTGCAGATGATAAATTTCCATACCCTAAACCTAGGCAAGCACCAGCAAGTAATATTAACCAGCTTTGATAGCTTGAAATTAAGCACACAAATGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/2325526‑2325293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGTGCTTAATTTCAAGCTATCAAAGCTGGTTAATATTACTTGCTGGTGCTTGCCTAGGTTTAGGGTATGGAAATTTATCATCTGCAATGCAATCTATTGCGATAAAAGTCTCACCCCCGATTAAATATGGTATCGCGACATCTACTTTTTACGTTGGTCTAGATGCAGGTGTCGGCTTCGGTCCATCATTCCTTGGGTTATTTACTCATATGTTTTCATATAGTGAAAT  >  NC_002745/2325304‑2325532
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
CTATATGAAAACATATGAGTAAATAACCCAAGGAATGATGGACCGAAGCCGACACCTGCATCTAGACCAACGTAAAAAGTAGATGTCGCGATACCATATTTAATCGGGGGTGAGACTTTTATCGCAATAGATTGCATTGCAGATGATAAATTTCCATACCCTAAACCTAGGCAAGCACCAGCAAGTAATATTAACCAGCTTTGATAGCTTGAAATTAAGCACACAAATGAAAGG                                                                                                                                                                                                                                       <  2:197494/234‑1
                                                             CTAGACCAACGTAAAAAGTAGATGTCGCGATACCATATTTAATCGGGGGTGAGACTTTTATCGCAATAGATTGCATTGCAGATGATAAATTTCCATACCCTAAACCTAGGCAAGCACCAGCAAGTAATATTAACCAGCTTTGATAGCTTGAAATTAAGCACACAAATGAAAGGTGTGCTTAATTTCAAGCTATCAAAGCTGGTTAATATTACTTGCTGGTGCTTGCCTAGGTTT                                                                                                                                                                          >  2:651265/1‑234
                                                                            AAGTAGATGTCGCGATACCATATTTAATCGGGGGTGAGACTTTTATCGCAATAGATTGCATTGCAGATGATAAATTTCCATACCCTAAACCTAGGCAAGCACCAGCAAGTAATATTAACCAGCTTTGATAGCTTGAAATTAAGCACACAAATGAAAGGTGTGCTTAATTTCAAGCTATCAAAGCTGGTTAATATTACTTGCTGGTGCTTGCCTAGGTTTAGGGTATGGAAATTT                                                                                                                                                           <  1:651265/234‑1
                                                                                                                                                                                                                                     attGGTGTGCTGAATTTCAAGCTAGCAAAGCTGGTTAATATTACTTGCTGGTGCTTGCCTAGGTTTAGGGTATGGAAATTTATCATCTGCAATGCAGTCTATTGCGATAAAAGTCTCACCCCCGATTAAATATGGTATCGCGACATCTACTTTTTACGTTGGTCTAGATGCAGGTGTCGGCTTCGGTCCATCATTCCTTGGGTTATTTACTCATATGTTTTCATATAGTGAAAT  <  2:1397628/231‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
CTATATGAAAACATATGAGTAAATAACCCAAGGAATGATGGACCGAAGCCGACACCTGCATCTAGACCAACGTAAAAAGTAGATGTCGCGATACCATATTTAATCGGGGGTGAGACTTTTATCGCAATAGATTGCATTGCAGATGATAAATTTCCATACCCTAAACCTAGGCAAGCACCAGCAAGTAATATTAACCAGCTTTGATAGCTTGAAATTAAGCACACAAATGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/2325526‑2325293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGTGCTTAATTTCAAGCTATCAAAGCTGGTTAATATTACTTGCTGGTGCTTGCCTAGGTTTAGGGTATGGAAATTTATCATCTGCAATGCAATCTATTGCGATAAAAGTCTCACCCCCGATTAAATATGGTATCGCGACATCTACTTTTTACGTTGGTCTAGATGCAGGTGTCGGCTTCGGTCCATCATTCCTTGGGTTATTTACTCATATGTTTTCATATAGTGAAAT  >  NC_002745/2325304‑2325532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.