New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002745	= 1691151	NA (NA)	19 (0.070)	10/464	8.9	NA	pseudogene (535/540 nt)	radC	DNA repair protein RadC
	?	NC_002745	2671111 =	NA (NA)					intergenic (‑4/+228)	SA_RS13640/SA_RS13645	serine protease/class I SAM‑dependent methyltransferase
Rejected: Coverage evenness skew score above cutoff.

TACTGGTTCTATTAGCTGGTATTCTTTATCTAGTAATAAATACAATGGATACGGCTTATTCTCCACTTCTATCCTTTGAACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/1690926‑1691151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTTATT  >  NC_002745/2671111‑2671343                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TACTGGTTCTATTAGCTGGTATTCTTTATCTAGTAATAAATACAATGGATACGGCTTATTCTCCACTTCTATCCTTTGAACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAG                                                                                                                                                                                                                                   <  1:385939/234‑1         CTATTAGCTGGTATTCTTTATCTAGTAATAAATACAATGGATACGGCTTATTCTCCACTTCTATCCTTTGAACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATT                                                                                                                                                                                                                           >  1:247824/1‑234                                                           TTCTCCACTTCTATCCTTTGAACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGA                                                                                                                                                                         <  2:247824/234‑1                                                                                ACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAA                                                                                                                                                    >  2:1530840/1‑234                                                                                                     TTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTT                                                                                                                               >  2:595390/1‑234                                                                                                        AAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAA                                                                                                                            >  2:1651596/1‑234                                                                                                                  ACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATT                                                                                                                          >  1:820895/1‑226                                                                                                                  ACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATT                                                                                                                          <  2:820895/226‑1                                                                                                                                             TTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTT                                                                                       <  1:595390/234‑1                                                                                                                                                 TATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTC                                                                                   <  1:1530840/234‑1                                                                                                                                                                                                                           AATACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTA         >  2:1438801/1‑234                                                                                                                                                                                                                             TACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAG       >  2:1171814/1‑234                                                                                                                                                                                                                              ACATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGA‑TTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTT     <  1:1607350/234‑1                                                                                                                                                                                                                               CATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTT     <  1:1636234/234‑1                                                                                                                                                                                                                               CATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTT     <  1:1556083/234‑1                                                                                                                                                                                                                               CATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTAGCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTT     <  1:332399/234‑1                                                                                                                                                                                                                                ATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAACCCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTTA    >  2:419070/1‑234                                                                                                                                                                                                                                ATCTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTTA    >  2:1673146/1‑234                                                                                                                                                                                                                                  CTTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTCTAAGTTATT  >  1:145029/1‑234                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TACTGGTTCTATTAGCTGGTATTCTTTATCTAGTAATAAATACAATGGATACGGCTTATTCTCCACTTCTATCCTTTGAACCTTCACATGTTCCCACCTCTTTAAATACTTTAACTACTACAAATTATAAACCTTGTTAATTTTTATTTAAAGTAAAATATCCCTTTAATATCTCCTCTTAAACTACTTTAACTACTATTATTTATTATACTATGGTTAATACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/1690926‑1691151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCAAGAGTAAATTACAAAAGAATCATTTAAATCAATACTTTCACTTTGAATACATGTATTTGAAGTGGAAGGTACTTATTTCAAAAATAGTAAAACCTGTATCTTAAATTACTTAATAGTAACATAAGATACAGGCTGATTTTTTATTCATTGTTATTTATACTAAAGCACCCGATAGCTCTGAAAACAATCACAAATTCAACTTTTCAAAGCCACAGCTTTAAGTTATT  >  NC_002745/2671111‑2671343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.