mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3744959 = | 232 (0.970) | 6 (0.030) | 6/278 | NT | 2.5% | coding (270/741 nt) | yiaT | putative outer membrane protein |
| ? | CP009273 | = 3752673 | 233 (0.970) | coding (549/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
| * | ? | CP009273 | 3399761 = | 255 (1.070) | 5 (0.020) | 3/254 | NT | 2.1% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 244 (1.120) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | = 3385461 | 243 (1.020) | 6 (0.030) | 5/212 | NT | 3.0% | noncoding (27/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | 3385736 = | 200 (1.100) | noncoding (302/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 5 (0.020) | 4/278 | NT | 2.1% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | 4341083 = | 238 (0.990) | coding (397/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration | |||||
| * | ? | CP009273 | = 2811301 | 196 (0.820) | 4 (0.020) | 4/238 | NT | 2.3% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 176 (0.860) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2369314 | 230 (0.960) | 4 (0.020) | 4/270 | NT | 1.8% | coding (128/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
| ? | CP009273 | 2507756 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | 2062422 = | NA (NA) | 6 (0.030) | 4/278 | NT | 2.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 2309894 | 229 (0.960) | coding (239/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN | |||||
| * | ? | CP009273 | 1874084 = | 252 (1.050) | 3 (0.010) | 3/274 | NT | 1.2% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | 2507755 = | NA (NA) | intergenic (+32/‑55) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | = 776968 | 156 (0.650) | 4 (0.020) | 4/244 | NT | 2.7% | intergenic (+68/‑65) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777236 = | 153 (0.730) | intergenic (+128/‑305) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | = 776678 | 117 (0.490) | 3 (0.010) | 3/242 | NT | 2.4% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | CP009273 | 2514844 = | 142 (0.680) | noncoding (572/1345 nt) | IS186 | repeat region | |||||