mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4224390 | 299 (1.140) | 5 (0.020) | 4/264 | NT | 1.8% | coding (705/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4224403 = | 267 (1.070) | coding (718/1650 nt) | pgi | glucosephosphate isomerase | |||||
| * | ? | CP009273 | 4096064 = | 234 (0.890) | 6 (0.020) | 6/276 | NT | 2.5% | coding (317/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein |
| ? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 3646590 | NA (NA) | 3 (0.010) | 3/276 | NT | 1.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 4515826 = | 236 (0.910) | intergenic (‑206/+97) | yjhI/sgcR | putative DNA‑binding transcriptional regulator/putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 9 (0.030) | 7/278 | NT | 3.7% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 4096069 | 234 (0.890) | coding (322/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein | |||||
| * | ? | CP009273 | = 2310161 | 257 (0.980) | 7 (0.030) | 6/278 | NT | 2.7% | coding (506/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 2282398 = | NA (NA) | 4 (0.020) | 3/278 | NT | 1.6% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 4515829 | 239 (0.910) | intergenic (‑209/+94) | yjhI/sgcR | putative DNA‑binding transcriptional regulator/putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2169361 | 281 (1.070) | 5 (0.020) | 3/270 | NT | 1.8% | coding (440/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | CP009273 | 2169367 = | 275 (1.080) | coding (434/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit | |||||
| * | ? | CP009273 | 1874084 = | 311 (1.190) | 4 (0.020) | 4/274 | NT | 1.3% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509093 | NA (NA) | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | = 1645805 | NA (NA) | 7 (0.030) | 6/278 | NT | 2.7% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| ? | CP009273 | 2310157 = | 256 (0.980) | coding (502/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN | |||||
| * | ? | CP009273 | = 1391494 | NA (NA) | 5 (0.020) | 5/266 | NT | 2.5% | intergenic (+145/‑128) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | CP009273 | 3795901 = | 208 (0.790) | coding (518/1020 nt) | waaR | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||