mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3179457 = | NA (NA) | 10 (0.040) | 7/272 | NT | 1.7% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3745860 | 576 (2.450) | coding (509/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2871455 | 257 (1.090) | 3 (0.020) | 3/216 | NT | 1.4% | intergenic (+478/+473) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871641 = | 220 (1.200) | intergenic (+664/+287) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2811301 | 216 (0.920) | 7 (0.030) | 4/236 | NT | 4.0% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 153 (0.760) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 6 (0.030) | 4/270 | NT | 2.4% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | 4533422 = | 246 (1.050) | coding (491/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 1874094 | 214 (0.910) | 8 (0.030) | 6/270 | NT | 3.7% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | 1874084 = | 212 (0.900) | 5 (0.020) | 4/272 | NT | 2.3% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | 2507755 = | NA (NA) | intergenic (+32/‑55) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | 361144 = | 8234 (35.010) | 76 (0.350) | 54/258 | NT | 0.96% | coding (600/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361139 | 7940 (36.140) | coding (605/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 360780 | 8127 (34.560) | 23 (0.100) | 15/274 | NT | 0.27% | coding (964/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 360789 = | 8624 (36.940) | coding (955/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 5 (0.020) +AATTC |
4/266 | NT | 3.4% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 147 (0.630) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||