| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 361152 | 5814 (18.630) | 6 (0.020) +CCAT |
6/270 | NT | 0.11% | coding (592/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 361153 = | 5814 (18.630) | coding (591/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCATGGTTTGTTGAAAACCGGACATGGCACTCCAGTCGCCTTCCCGTTCCGCTATCGGCTGAATTTGATTGCGAGTGAGATATTTATGCCAGCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/361052‑361152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCAGACGCGCCGAGACAGAACTTAATGGGCCCGCTAACAGCGCGATTTGCTGGTGACCCAATGCGACCAGATGCTCCACGCCCAGTCGCGTACCGTCTTCATGGGAGAAAATAATACTGTTGATGGGTGTCTGGTCAGAGACATC > CP009273/361153‑361299 |||| TGCATGGTTTGTTGAAAACCGGACATGGCACTCCAGTCGCCTTCCCGTTCCTCTATCGGATGAATTTGAGTGCGAGTGAGAAATTTAAGCCAGCAATCAAGCCATACGAAGACGCGCCGAGACAGAACTTAATGAGCACGATAAAAGCtc > 2:2814087/1‑148 AACCGGACATGGCACTCCAGTCGCCTTCCCGTTCCGCTATCGGCTGAATTTGATTGCGAGTGAGATATTTATGCCAGCCAGCCAGCCATACGCAGACGCGCCGAGACAGAACTTAATGGGCCCGCTAACAGCGCGATTTGCTGGTGACCC < 2:4801331/150‑1 ATGGCACTCAAGTCTCCTTCACGTTCCGCTATCGGCTGAATATGATTGCGAGTGAGATATTTATGCCAGCCAGCCAGCCATACGCAGAAGCGCCGAGACAGAACTTAATGGGCCCGCTAACAGCGCGATTTGCAGGTGACCCAATGCGAC > 2:3704745/1‑150 atTCGCCTTACCGTTCCTCTATCGGCTGAATTTGATTGCGAGTGAGATATTTATGCCAGCCAGCCAGCCATACGCAGACGCGCCGAGACAGAACTTAATGGTCCCGCTAACAGCGCGATTTGCTGGTGACCCAATGCGACCAGATGCTCC < 1:2936840/148‑1 AATTTGATTGCGAGTGAGATATTTATGCCAGCCATCCAGCCATACGCAGACGCTACGAGACAGAACTTAATGGTCCCGCTAACAGCGCGATTTTCTGGTGACCCAATGCGACCAGATGATCCACGCCCAGTCGAGTACCGTCTTCATGGG < 2:3358942/150‑1 TTATGCCAGCCAGCCAGCCATTCGCAGACGCGCCGATACAGAACTTAATGGGCCCGCTAACAGCGCGATTTGCTGGTGACCCAATGCGACCAGATGCTCCACGCCCAGTCGCGTACCGTCTTCATGGGAGAAAATAATACTGTTGATGGG < 2:2609331/150‑1 GCCATACGCAGACGCTCCGATACAGAACTTAATGGGCACGCTAACAGCGCGATTTGCTGGTGACCCAATGAGACCAGATGCTCCACGCCCAGTCGCGTACCGTCTTCATGGGATAAAATAATACTGTTGATGGGTGTCTGGTCAGAGACA < 2:3592974/150‑1 aATACGCAGTCGCGCCGAGACAGAACTTAATGGGCACGCTTACAGCGCGATTTGATGGTGACCCTATGCGACAAGATGCTCCTCGCCCAGTCGCGTTCCGTCTTCATGGGAGAAAATAATACTGTTGATGGGTGTCTGGTCAGAGACATC < 1:3664854/149‑1 |||| TGCATGGTTTGTTGAAAACCGGACATGGCACTCCAGTCGCCTTCCCGTTCCGCTATCGGCTGAATTTGATTGCGAGTGAGATATTTATGCCAGCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/361052‑361152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCAGACGCGCCGAGACAGAACTTAATGGGCCCGCTAACAGCGCGATTTGCTGGTGACCCAATGCGACCAGATGCTCCACGCCCAGTCGCGTACCGTCTTCATGGGAGAAAATAATACTGTTGATGGGTGTCTGGTCAGAGACATC > CP009273/361153‑361299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |