mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4489328 | NA (NA) | 4 (0.010) | 3/276 | NT | 1.9% | intergenic (+11/+82) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment |
| ? | CP009273 | = 4535798 | 204 (0.730) | coding (886/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | CP009273 | 3399761 = | 323 (1.150) | 3 (0.010) | 3/254 | NT | 1.00% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 302 (1.180) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 8 (0.030) | 5/278 | NT | 3.3% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 4346535 = | 238 (0.850) | coding (1900/2148 nt) | cadA | lysine decarboxylase, acid‑inducible | |||||
| * | ? | CP009273 | = 2970816 | 302 (1.070) | 3 (0.010) | 3/252 | NT | 1.1% | coding (859/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| ? | CP009273 | 2971063 = | 273 (1.070) | coding (1196/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding | |||||
| * | ? | CP009273 | = 2871455 | 316 (1.120) | 5 (0.020) | 5/218 | NT | 1.7% | intergenic (+478/+473) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871641 = | 320 (1.450) | intergenic (+664/+287) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2871150 | 382 (1.360) | 3 (0.010) | 3/242 | NT | 0.96% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871334 = | 285 (1.170) | intergenic (+357/+594) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | 2758779 = | 186 (0.660) | 4 (0.020) | 4/190 | NT | 2.6% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | CP009273 | = 2758770 | 168 (0.880) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | CP009273 | = 2509092 | NA (NA) | 5 (0.020) | 4/272 | NT | 1.9% | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | CP009273 | = 4533433 | 269 (0.960) | coding (502/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 5 (0.020) | 4/272 | NT | 1.9% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | 4533422 = | 262 (0.930) | coding (491/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 2434391 | 315 (1.120) | 5 (0.020) | 5/252 | NT | 1.8% | coding (694/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| ? | CP009273 | 2434527 = | 275 (1.080) | coding (558/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I | |||||