mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3179455 = | NA (NA) | 9 (0.030) | 8/276 | NT | 2.8% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3360465 | 307 (1.030) | coding (181/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | 2989720 = | NA (NA) | 8 (0.030) | 6/276 | NT | 2.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 3360461 = | 300 (1.000) | coding (177/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 2871515 | 395 (1.320) | 5 (0.020) | 5/218 | NT | 1.5% | intergenic (+538/+413) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871762 = | 335 (1.420) | intergenic (+785/+166) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2871150 | 447 (1.500) | 3 (0.010) | 3/240 | NT | 0.81% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871334 = | 342 (1.320) | intergenic (+357/+594) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | 2386097 = | 271 (0.910) | 4 (0.010) | 3/256 | NT | 1.5% | coding (424/1530 nt) | nuoM | NADH:ubiquinone oxidoreductase, membrane subunit M |
| ? | CP009273 | = 2386093 | 262 (0.950) | coding (428/1530 nt) | nuoM | NADH:ubiquinone oxidoreductase, membrane subunit M | |||||
| * | ? | CP009273 | = 1938494 | 304 (1.020) | 3 (0.010) | 3/242 | NT | 1.1% | noncoding (19/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 1938592 = | 262 (1.000) | noncoding (117/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | 1384976 = | 356 (1.190) | 4 (0.010) | 4/276 | NT | 1.1% | intergenic (‑121/+6) | mpaA/ymjC | murein peptide amidase A/pseudogene |
| ? | CP009273 | 1462167 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 923680 | 286 (0.960) | 3 (0.010) | 3/276 | NT | 1.0% | coding (972/1722 nt) | cydC | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| ? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 777144 | 211 (0.710) | 4 (0.020) | 4/168 | NT | 2.9% | intergenic (+36/‑397) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | CP009273 | 777301 = | 136 (0.750) | intergenic (+193/‑240) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 3 (0.010) +AATTC |
3/266 | NT | 1.3% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 233 (0.780) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||