mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180785 | NA (NA) | 7 (0.030) | 5/278 | NT | 2.6% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3284621 = | 259 (0.970) | coding (2449/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | CP009273 | 3179456 = | NA (NA) | 4 (0.020) | 4/276 | NT | 1.5% | intergenic (+8/‑90) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3284626 | 257 (0.960) | coding (2454/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | CP009273 | = 2897644 | 386 (1.440) | 3 (0.010) | 3/220 | NT | 1.1% | intergenic (+911/+462) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897767 = | 233 (1.100) | intergenic (+1034/+339) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 4 (0.020) | 3/272 | NT | 1.7% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | 2948450 = | 242 (0.900) | coding (913/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit | |||||
| * | ? | CP009273 | = 361823 | 268 (1.000) | 6 (0.020) +TTAATTAA |
5/262 | NT | 2.2% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 299 (1.120) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 310940 = | 277 (1.030) | 9 (0.030) +T |
8/276 | NT | 4.7% | intergenic (+1/‑62) | eaeH/insE1 | pseudogene, attaching and effacing protein homology;factor; Not classified/IS3 transposase A |
| ? | CP009273 | = 3763277 | 92 (0.340) | intergenic (+134/‑31) | yibV/yibU | pseudogene/pseudogene, H repeat‑associated protein | |||||