mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 1,542,102 | 0 | T | G | 53.3% | ‑0.3 / 13.7 | 17 | intergenic (+31/‑214) | CJ019_01454/groS | hypothetical protein/10 kDa chaperonin |
| * | ACB122 | 3,440,367 | 0 | T | G | 53.3% | 5.2 / 21.5 | 31 | W26G (TGG→GGG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 3,637,133 | 0 | G | C | 49.0% | ‑2.8 / 70.1 | 52 | A277G (GCC→GGC) | ssuB_2 | Aliphatic sulfonates import ATP‑binding proteinSsuB |
| * | ACB122 | 6,096,658 | 0 | G | A | 46.2% | 5.1 / 86.6 | 65 | G279S (GGT→AGT) | CJ019_05710 | hypothetical protein |
| * | ACB122 | 4,277,043 | 0 | T | G | 38.9% | 27.3 / 15.7 | 36 | G278G (GGT→GGG) | hbd | 3‑hydroxybutyryl‑CoA dehydrogenase |
| * | ACB122 | 3,365,238 | 0 | G | C | 24.3% | 143.5 / 12.3 | 77 | intergenic (‑109/‑10) | csoR/CJ019_03165 | Copper‑sensing transcriptional repressor CsoR/hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 588832 | 75 (1.320) | 3 (0.060) | 3/238 | 6.2 | 6.4% | coding (372/1266 nt) | CJ019_00552 | hypothetical protein |
| ? | ACB122 | = 3437064 | 19 (0.360) | coding (2766/3270 nt) | CJ019_03261 | hypothetical protein | |||||