breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 690,144 A→G intergenic (+21/‑2438) bauC → / → PP_RS08750 Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 87940 88062 123 22 [19] [18] 23 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB122 161211 161447–161315 105–237 20 [19] [18] 21 [uctC_1] [uctC_1]
* * ÷ ACB122 674245 674410 166 21 [17] [19] 20 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB122 1119627 1119715 89 21 [15] [18] 29 tdcG_2/gcvP_1 L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating)
* * ÷ ACB122 1492461 1492596 136 22 [19] [18] 21 [CJ019_01406] [CJ019_01406]
* * ÷ ACB122 1524752 1524920 169 20 [19] [19] 20 CJ019_01439 hypothetical protein
* * ÷ ACB122 1585616 1585715 100 20 [18] [18] 20 CJ019_01493 hypothetical protein
* * ÷ ACB122 1923408 1923557 150 20 [18] [18] 21 [apeB] [apeB]
* * ÷ ACB122 2467207 2467225 19 32 [0] [7] 27 CJ019_02325/tal hypothetical protein/Transaldolase
* * ÷ ACB122 3046195 3046347 153 20 [18] [17] 21 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB122 3769388 3769484 97 20 [19] [18] 20 CJ019_03581/CJ019_03582 hypothetical protein/hypothetical protein
* * ÷ ACB122 4163769 4163893 125 22 [19] [18] 27 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB122 4331624 4331788 165 20 [18] [19] 22 [ribBA_2] [ribBA_2]
* * ÷ ACB122 4732421 4732535 115 21 [16] [19] 25 [CJ019_04468] [CJ019_04468]
* * ÷ ACB122 4846353 4846501 149 20 [19] [19] 23 recR/ybaB Recombination protein RecR/Nucleoid‑associated protein YbaB
* * ÷ ACB122 4912602 4967483 54882 69 [1] [0] 51 [CJ019_04608]–[CJ019_04661] [CJ019_04608],CJ019_04609,CJ019_04610,CJ019_04611,cheW,CJ019_04613,soj_1,motB_1,pomA,cheB1,CJ019_04618,cheZ,cheY,fliA,ylxH,CJ019_04623,srp54,flhA,rspR_2,ddlA,CJ019_04628,aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,[CJ019_04661]
* * ÷ ACB122 5193577 5193691 115 20 [17] [18] 20 [gltR_4]–[CJ019_04888] [gltR_4],[CJ019_04888]
* * ÷ ACB122 5250752 5250877 126 20 [19] [18] 22 [CJ019_04947]–[CJ019_04948] [CJ019_04947],[CJ019_04948]
* * ÷ ACB122 5809511 5809738 228 20 [18] [19] 21 [pilT] [pilT]
* * ÷ ACB122 5890361 5890484 124 21 [19] [19] 20 CJ019_05517/czcA_3 hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA
* * ÷ ACB122 5895756 5895867 112 21 [17] [19] 21 [CJ019_05521] [CJ019_05521]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? ACB122 1806729 =1 (0.020)62 (1.090) 36/258 0.3 98.4% coding (28/855 nt) yeiG S‑formylglutathione hydrolase YeiG
?ACB122 = 1806734 NA (NA)coding (33/855 nt) yeiG S‑formylglutathione hydrolase YeiG
* ? ACB122 3359610 =42 (0.740)50 (0.890) 36/256 0.3 70.6% intergenic (+219/‑151) pikAII_1/CJ019_03160 Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42
?ACB122 4967484 = 0 (0.000)coding (29/1566 nt) CJ019_04661 hypothetical protein
* ? ACB122 = 337662274 (1.300)68 (1.210) 40/256 0.1 64.6% coding (501/546 nt) CJ019_03184 hypothetical protein
?ACB122 = 4912601 1 (0.020)coding (1035/1557 nt) CJ019_04608 hypothetical protein