mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 690,144 | A→G | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 3,061,793 | G→A | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,957,060 | A→T | Y197N (TAC→AAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 5,757,239 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87947 | 88057 | 111 | 31 [27] | [27] 30 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 674245 | 674396 | 152 | 32 [28] | [26] 30 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 711460 | 711557 | 98 | 33 [28] | [26] 29 | [thiO]–[aam] | [thiO],[aam] |
| * | * | ÷ | KT2440 | 2288837 | 2288949 | 113 | 31 [28] | [28] 31 | [CJ019_02172] | [CJ019_02172] |
| * | * | ÷ | KT2440 | 3046209 | 3046360 | 152 | 30 [28] | [28] 29 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3769378 | 3769515 | 138 | 35 [26] | [27] 29 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 4163755 | 4163880 | 126 | 30 [28] | [26] 31 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4346803 | 4346886 | 84 | 29 [20] | [28] 29 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | KT2440 | 4734412 | 4734533 | 122 | 29 [28] | [27] 29 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | KT2440 | 4846232 | 4846352 | 121 | 29 [27] | [27] 31 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 4944725 | 4944850 | 126 | 30 [28] | [27] 29 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5500270 | 5500520 | 251 | 29 [28] | [28] 33 | [CJ019_05176] | [CJ019_05176] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 1 (0.010) | 123 (1.570) | 47/254 | 0.2 | 99.2% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 2 (0.020) | 85 (1.080) | 47/256 | 0.2 | 97.7% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||