mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 690,144 | A→G | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 690,150 | T→G | intergenic (+27/‑2432) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 3,061,793 | G→A | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,155,891 | G→T | D68Y (GAT→TAT) | acpP_2 → | Acyl carrier protein |
| RA | 3,957,351 | G→A | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 5,757,239 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87977 | 88062 | 86 | 29 [26] | [27] 30 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 517190 | 517328 | 139 | 32 [12] | [25] 28 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 674246 | 674414 | 169 | 28 [27] | [25] 35 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 711465 | 711592 | 128 | 30 [27] | [27] 28 | [thiO]–[aam] | [thiO],[aam] |
| * | * | ÷ | KT2440 | 1914559 | 1914661 | 103 | 28 [26] | [26] 28 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | KT2440 | 1940799 | 1940949 | 151 | 30 [27] | [25] 28 | CJ019_01857/gshAB | hypothetical protein/Glutathione biosynthesis bifunctional proteinGshAB |
| * | * | ÷ | KT2440 | 3046206 | 3046354 | 149 | 29 [26] | [27] 28 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 4163763 | 4163881 | 119 | 30 [26] | [27] 28 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4332078 | 4332183 | 106 | 33 [27] | [27] 29 | [CJ019_04068] | [CJ019_04068] |
| * | * | ÷ | KT2440 | 4333649 | 4333788 | 140 | 29 [26] | [25] 28 | [ribBA_2] | [ribBA_2] |
| * | * | ÷ | KT2440 | 4668923 | 4669049 | 127 | 30 [27] | [27] 29 | [btuB_4] | [btuB_4] |
| * | * | ÷ | KT2440 | 4846179 | 4846359 | 181 | 30 [27] | [25] 29 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 5500262 | 5500472 | 211 | 28 [27] | [20] 30 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | KT2440 | 5891523 | 5891670 | 148 | 29 [26] | [27] 30 | [czcA_3] | [czcA_3] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 1 (0.010) | 86 (1.210) | 42/254 | 0.3 | 98.9% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 86 (1.200) | 43/256 | 0.3 | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||