mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 2,856,886 | 0 | T | G | 53.6% | ‑4.2 / 12.5 | 29 | S297A (TCG→GCG) | hdfR_4 | HTH‑type transcriptional regulator HdfR |
| * | KT2440 | 434,373 | 0 | T | G | 52.6% | 1.5 / 14.5 | 19 | G68G (GGT→GGG) | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | KT2440 | 1,740,407 | 0 | T | G | 52.2% | 0.2 / 11.0 | 23 | E53A (GAG→GCG) | CJ019_01643 | hypothetical protein |
| * | KT2440 | 1,524,732 | 0 | T | G | 44.4% | 21.2 / 11.4 | 37 | Q67P (CAG→CCG) | CJ019_01439 | hypothetical protein |
| * | KT2440 | 2,094,808 | 0 | A | C | 43.4% | 12.7 / 14.1 | 53 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | KT2440 | 916,696 | 0 | T | G | 43.1% | 68.3 / 14.2 | 58 | Q516P (CAG→CCG) | ltxB | Leukotoxin export ATP‑binding protein LtxB |
| * | KT2440 | 5,384,265 | 0 | C | G | 42.0% | 53.9 / 23.2 | 51 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 5,384,276 | 0 | C | G | 38.0% | 47.6 / 32.0 | 52 | intergenic (+539/‑319) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 4,350,360 | 0 | T | G | 37.7% | 71.3 / 11.8 | 53 | R28R (CGT→CGG) | CJ019_04090 | hypothetical protein |
| * | KT2440 | 3,138,367 | 0 | T | G | 37.3% | 70.0 / 24.0 | 67 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | KT2440 | 3,586,408 | 0 | C | A | 37.1% | 78.1 / 20.6 | 70 | F129L (TTC→TTA) | CJ019_03399 | hypothetical protein |
| * | KT2440 | 5,384,273 | 0 | G | T | 34.6% | 56.7 / 16.2 | 52 | intergenic (+536/‑322) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 5,384,286 | 0 | G | T | 34.6% | 61.0 / 17.1 | 52 | intergenic (+549/‑309) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 1,537,415 | 0 | C | G | 34.3% | 49.8 / 18.4 | 36 | A388G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | KT2440 | 1,537,421 | 0 | T | G | 31.4% | 54.9 / 15.5 | 35 | V390G (GTG→GGG) | mdfA | Multidrug transporter MdfA |
| * | KT2440 | 1,537,412 | 0 | C | G | 30.6% | 58.9 / 16.0 | 36 | A387G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | KT2440 | 2,113,895 | 0 | T | G | 30.4% | 67.4 / 10.8 | 46 | R663R (CGT→CGG) | CJ019_02007 | hypothetical protein |
| * | KT2440 | 452,940 | 0 | G | C | 27.6% | 91.0 / 11.0 | 61 | intergenic (‑36/+274) | pqqB/CJ019_00410 | Coenzyme PQQ synthesis protein B/hypothetical protein |
| * | KT2440 | 5,384,289 | 0 | C | G | 27.5% | 84.6 / 11.3 | 52 | intergenic (+552/‑306) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 2,770,092 | 0 | G | C | 26.7% | 132.1 / 21.5 | 76 | A157G (GCG→GGG) | CJ019_02613 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 2264809 = | 44 (0.600) | 5 (0.070) | 4/254 | 7.4 | 8.9% | noncoding (37/77 nt) noncoding (37/77 nt) |
PP_RS08755 PP_RS08765 |
tRNA‑Asp tRNA‑Asp |
| ? | KT2440 | = 3134198 | 59 (0.830) | coding (58/972 nt) | CJ019_02952 | hypothetical protein | |||||
| * | ? | KT2440 | 1891946 = | 24 (0.330) | 3 (0.040) | 3/254 | 8.0 | 6.8% | noncoding (37/77 nt) noncoding (37/77 nt) |
PP_RS08755 PP_RS08765 |
tRNA‑Asp tRNA‑Asp |
| ? | KT2440 | = 3134198 | 59 (0.830) | coding (58/972 nt) | CJ019_02952 | hypothetical protein | |||||
| * | ? | KT2440 | 1891610 = | 20 (0.270) | 3 (0.040) | 3/254 | 8.0 | 7.1% | noncoding (37/77 nt) noncoding (37/77 nt) |
PP_RS08755 PP_RS08765 |
tRNA‑Asp tRNA‑Asp |
| ? | KT2440 | = 3134198 | 59 (0.830) | coding (58/972 nt) | CJ019_02952 | hypothetical protein | |||||