mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| JC | 914,673 | (ATATG)1→2 | intergenic (‑133/‑18) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 1,327,818 | Δ1 bp | coding (2514/2598 nt) | topA → | type I DNA topoisomerase |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 274969–275642 | 287023–286345 | 10704–12055 | 112 [111] | [110] 112 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| * | * | ÷ | NZ_CP009273 | 387283–388427 | 396036 | 7610–8754 | 112 [111] | [1] 218 | [BW25113_RS01920]–[ddlA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,[ddlA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 213 (1.180) | 173/496 | 0.0 | 96.4% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | 651715 = | 8 (0.040) | intergenic (‑291/‑298) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP | |||||
| * | ? | NZ_CP009273 | = 388421 | NA (NA) | 212 (1.180) | 170/494 | 0.0 | 99.5% | intergenic (‑64/‑8) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 396037 = | 1 (0.010) | coding (343/1095 nt) | ddlA | D‑alanine‑‑D‑alanine ligase | |||||
| * | ? | NZ_CP009273 | = 651723 | 7 (0.040) | 170 (0.950) | 142/494 | 0.2 | 96.1% | intergenic (‑299/‑290) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 42 (0.230) | 137 (0.810) | 113/464 | 0.8 | 78.9% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 34 (0.200) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 42 (0.230) | 100 (0.590) | 86/464 | 2.7 | 73.2% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 34 (0.200) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 234 (1.300) | 170/496 | 0.0 | 98.3% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3793686 = | 4 (0.020) | coding (640/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
| * | ? | NZ_CP009273 | = 2283592 | NA (NA) | 208 (1.160) | 155/496 | 0.1 | 98.1% | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3793689 | 4 (0.020) | coding (637/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||