mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,332,267 | G→T | S114* (TCG→TAG) | mlaE ← | lipid asymmetry maintenance ABC transporter permease subunit MlaE |
| RA | 3,794,325 | T→G | M1M (ATG→CTG) † | rfaY ← | lipopolysaccharide core heptose(II) kinase RfaY |
| RA | 4,175,791 | T→G | F172V (TTC→GTC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 4,323,524 | C→T | D82N (GAT→AAT) | basR ← | two‑component system response regulator BasR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3416728 | 3417884–3417022 | 295–1157 | 86 [85] | [85] 87 | rrf–[BW25113_RS16985] | rrf,BW25113_RS16975,rrf,[BW25113_RS16985] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3416707 | 89 (0.610) | 12 (0.360) +191 bp |
12/114 | 2.7 | 37.1% | intergenic (+154/+77) | yhdZ/rrf | amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA |
| ? | NZ_CP009273 | 3416716 = | 88 (0.600) | intergenic (+163/+68) | yhdZ/rrf | amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA | |||||