mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,592,733 | T→C | intergenic (‑390/+141) | BW25113_RS07915 ← / ← lsrK | ECSE_1600 family autotransporter/autoinducer‑2 kinase |
| RA | 3,384,765 | A→C | F208C (TTT→TGT) | tldD ← | metalloprotease TldD |
| RA | 4,323,527 | G→T | R81S (CGC→AGC) | basR ← | two‑component system response regulator BasR |
| RA | 4,478,195 | G→A | W354* (TGG→TAG) | lptG → | LPS export ABC transporter permease LptG |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 50 (0.500) | 67 (0.670) | 56/496 | 2.0 | 55.1% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 59 (0.590) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||