mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 57,069 | G→T | A14D (GCC→GAC) | lptD ← | LPS assembly protein LptD |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,913,385 | T→G | V540G (GTT→GGT) | yebT → | lipid‑binding membrane homeostasis protein YebT |
| JC | 3,300,211 | (CGCACGACC)1→2 | coding (1009/1890 nt) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | 3,961,365 | (A)7→6 | coding (90/1104 nt) | wecA → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 4,323,527 | G→T | R81S (CGC→AGC) | basR ← | two‑component system response regulator BasR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3624595 | 3646446–3645390 | 20796–21852 | 65 [0] | [24] 25 | [yhiJ]–[BW25113_RS18160] | [yhiJ],BW25113_RS18065,yhiM,yhiN,pitA,uspB,uspA,BW25113_RS26225,BW25113_RS26230,dtpB,rsmJ,prlC,rlmJ,gorA,dinQ,arsR,arsB,arsC,BW25113_RS18155,[BW25113_RS18160] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 29 (0.520) | 33 (0.600) | 31/494 | 1.6 | 50.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 37 (0.670) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 8 (0.140) | 41 (0.790) | 40/462 | 0.6 | 84.1% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 8 (0.150) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 8 (0.140) | 43 (0.830) | 43/462 | 0.4 | 84.8% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 8 (0.150) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 3624594 | 0 (0.000) | 65 (1.180) | 55/494 | 0.1 | 100% | coding (1357/1623 nt) | yhiJ | YhiJ/YhiL family protein |
| ? | NZ_CP009273 | 3645396 = | NA (NA) | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein | |||||