mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 2,084,507 | G→T | E279* (GAA→TAA) | hisG → | ATP phosphoribosyltransferase |
| RA | 2,678,532 | G→A | P112L (CCA→CTA) | glyA ← | serine hydroxymethyltransferase |
| MC JC | 3,332,948 | Δ18 bp | coding (460‑477/810 nt) | mlaF ← | phospholipid ABC transporter ATP‑binding protein MlaF |
| MC JC | 3,336,757 | (AAAC)3→2 | coding (563‑566/576 nt) coding (19‑22/558 nt) |
lptC → lptA → |
LPS export ABC transporter periplasmic protein LptC lipopolysaccharide ABC transporter substrate‑binding protein LptA |
| RA | 4,322,797 | A→G | L101P (CTG→CCG) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 121569 = | 1 (0.010) | 76 (1.080) | 73/494 | 0.1 | 98.7% | coding (2066/2664 nt) | aceE | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| ? | NZ_CP009273 | = 312193 | NA (NA) | intergenic (+29/+1) | BW25113_RS01545/BW25113_RS01550 | IS3‑like element IS3 family transposase/helix‑turn‑helix domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 121572 | 1 (0.010) | 83 (1.180) | 79/496 | 0.0 | 98.8% | coding (2069/2664 nt) | aceE | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| ? | NZ_CP009273 | = 388422 | NA (NA) | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 360104 = | 50 (0.710) | 59 (0.840) | 48/496 | 0.9 | 54.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 48 (0.680) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 10 (0.140) | 61 (0.920) | 60/464 | 0.2 | 88.8% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 6 (0.090) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 10 (0.140) | 72 (1.090) | 63/464 | 0.2 | 90.4% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 6 (0.090) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||